Jeremy Leipzig (leipzig)

leipzig

Geek Repo

Company:@TileDB-Inc

Location:Whitefish, MT

Home Page:https://www.linkedin.com/in/leipzig/

Twitter:@jermdemo

Github PK Tool:Github PK Tool


Organizations
DBHi-BiC
TileDB-Inc

Jeremy Leipzig's repositories

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

Awesome-Bioinformatics-Benchmarks

A curated list of bioinformatics bench-marking papers and resources.

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m6a

Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

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biopick2021

some crowd wisdom here

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biocondastats

compile bioconda usage statistics

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biostar-tutorials

Code for biostar tutorials - mostly R and Perl

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replaceScience

WordReplacerII files for turning science articles into something far, far more trivial

placenta

Reproduction of Leiby et al. placental microbiome paper

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annocmpd

Verify clinical trial stage and patent information for compound library entries

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asciiruler

generate an ascii ruler

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awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

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biopick2022

https://twitter.com/search?q=%23biopick2022

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broadlicenses

all the public licenses for broad repos

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cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

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cwltool

Common Workflow Language reference implementation

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drexelthesistemplate

provided by Mark Boady

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high_altitude_real_estate

find the home prices of the highest altitude counties

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nfcore-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

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opencode_opendata_termcounts

lens.org counts of "open data" and "open code" in the abstract

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payday

Payday was a web app I created in 2003 for filling out work schedules

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r-base-feedstock

A conda-smithy repository for r-base.

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remotelessdockernotes

notes on localizing remote dependencies for reproducible docker builds

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sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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SUPPA

SUPPA2: Fast quantification of differential splicing

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tests_of_robustness_dissertation

Tests of Robustness in Peer Review

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tox-conda

Make tox cooperate with conda envs

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