leipzig

awesome-reproducible-research

A curated list of reproducible research case studies, projects, tutorials, and media

ancestryinformativemarkers

Public AIMs

Awesome-Bioinformatics-Benchmarks

A curated list of bioinformatics bench-marking papers and resources.

biopick2021

some crowd wisdom here

biocondastats

compile bioconda usage statistics

biostar-tutorials

Code for biostar tutorials - mostly R and Perl

replaceScience

WordReplacerII files for turning science articles into something far, far more trivial

placenta

Reproduction of Leiby et al. placental microbiome paper

annocmpd

Verify clinical trial stage and patent information for compound library entries

asciiruler

generate an ascii ruler

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

biopick2022

https://twitter.com/search?q=%23biopick2022

broadlicenses

all the public licenses for broad repos

cromwell

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

cwltool

Common Workflow Language reference implementation

drexelthesistemplate

provided by Mark Boady

fcs_aws_tools

tools for dealing with fcs files in s3, the database, and other daily needs for CytoVas

high_altitude_real_estate

find the home prices of the highest altitude counties

nfcore-modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

opencode_opendata_termcounts

lens.org counts of "open data" and "open code" in the abstract

payday

Payday was a web app I created in 2003 for filling out work schedules

qualtricssurvey

r-base-feedstock

A conda-smithy repository for r-base.

remotelessdockernotes

notes on localizing remote dependencies for reproducible docker builds

rmats-turbo

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

SUPPA

SUPPA2: Fast quantification of differential splicing

tests_of_robustness_dissertation

Tests of Robustness in Peer Review

tox-conda

Make tox cooperate with conda envs

vcf-4-population-genomics-team-park