research-compendium

There are 11 repositories under research-compendium topic.

• benmarwick / rrtools

  rrtools: Tools for Writing Reproducible Research in R

  rreproducible-researchreproducibilityreproducible-scienceresearch-projectresearch-paperresearch-toolreproducible-paperresearch-compendiumquartoquarto-template
  Language:R 661

• Pakillo / template

  A template for data analysis projects structured as R packages (or not)

  rworkflowproject-templateresearch-compendium
  Language:R 168

• jhollist / manuscriptPackage

  Template for writing manuscripts as an R package

  research-compendium
  Language:R 54

• cboettig / noise-phenomena

  :notebook: Ecology Letters review paper: Noise-driven phenomena in population biology

  research-compendiumreproducible-researchecologystochasticity
  Language:TeX 50

• cboettig / nonparametric-bayes

  :notebook: Non-parametric Bayesian Inference for Conservation Decisions

  research-compendiumreproducible-researchmanuscriptr
  Language:TeX 42

• FRBCesab / rcompendium

  :package: Create a package or compendium structure

  rpackageresearch-compendiumreproducible-research
  Language:R 36

• research-compendium / how-to-read-a-research-compendium

  "How to Read a Research Compendium" - based on S. Keshav's "How to Read a Paper"

  how-toopen-scholarshipopen-sciencereproducibilityreproducible-researchresearch-compendiumscience
  Language:TeX 29

• earowang / thesis

  PhD thesis

  bookdownresearch-compendium
  Language:HTML 26

• pat-s / 2019-feature-selection

  Research project

  machine-learningenvironmental-modelingfeature-selectionforest-healthecological-modelingrresearch-compendium
  Language:R 26

• mbjoseph / neuralecology

  Code for the paper "Neural hierarchical models of ecological populations"

  deep-learningecologyoccupancybayesianhierarchical-modelscience-based-deep-learningresearch-compendium
  Language:Jupyter Notebook 22

• openplantpathology / Reproducibility_in_Plant_Pathology

  A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.

  plant-pathologyreproducible-researchreproducible-scienceopen-sciencerrstatsresearch-compendium
  Language:TeX 22

• annakrystalli / rrtools-repro-research

  Tutorial on Reproducible Research in R with rrtools

  workshop-websiterstatsreproducible-researchresearch-compendiumrrtools
  Language:R 19

• benmarwick / mjbtramp

  compendiumarchaeologyreproducible-paperarchaeological-scienceresearch-compendium
  Language:TeX 17

• boettiger-lab / pomdp-intro

  :notebook: A separate repo for first pomdp paper (AmNat)

  compendiumresearch-compendium
  Language:TeX 17

• FRBCesab / datatoolbox

  :mortar_board: Data Toolbox Training

  recherche-reproductibletidyversedockerr-packageresearch-compendiumgitgithubtargetsrmarkdownrenvr-function
  Language:HTML 17

• benmarwick / 1989-excavation-report-Madjedbebe

  Text, data and code to accompany the analysis of the 1989 excavation data

  compendiumarchaeologyreproducible-paperarchaeological-scienceresearch-compendium
  Language:R 14

• cboettig / pdg_control

  :notebook: Pretty Darn Good Control: applications in optimal control

  manuscriptreproducible-researchresearch-compendiumr
  Language:R 11

• everhartlab / sclerotinia-366

  Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

  reproducible-paperfungalplant-pathologyreproducible-researchreproducible-sciencedocker-containerrrmarkdownsclerotiniasclerotinia-sclerotiorumresearch-compendium
  Language:Shell 10

• brazil-data-cube / wlts-paper

  Research compendium of the article: A plataform for land use and land cover data integration and trajectory analysis

  research-compendiumreproducibilityland-use-land-coverearth-observationweb-service
  Language:Jupyter Notebook 9

• research-compendium / research-compendium.github.io

  Website repository

  research-compendium
  Language:HTML 9

• C-C-A-A / CologneProtocol-R

  Research compedium for "Approaching Prehistoric Demography: Proxies, Scales and Scope of the Cologne Protocol in European contexts" including a manual of the Cologne Protocol

  research-compendiumarchaeologydemographygis
  Language:R 8

• mbjoseph / wildfire-extremes

  Spatiotemporal modeling of wildfire extremes

  stanbayesianfireecologyresearch-compendium
  Language:HTML 8

• annakrystalli / rrcompendiumDTB

  Full Reproducible Research Compendium produced with rrtools including travis, dockerfile & binder setup

  rrtoolsrstatsresearch-compendiumdockerizedbinder-readytravis-ci
  Language:TeX 7

• rgayler / scorecal_CSCC_2019

  "scorecal - Empirical score calibration under the microscope" presentation given at Credit Scoring & Credit Control XVI, Edinburgh, UK, 2019-08-30

  score-calibrationconference-presentationnotebookreproducibilitybinderbinder-docker-imagecredit-scoringresearch-compendium
  Language:R 7

• annakrystalli / rrcompendium-complete

  Complete example of compendium produced during rrtools: reproducible research in R workshop

  workshop-materialsresearch-compendiumrrtooolsrstats
  Language:TeX 6

• bbartholdy / byoc-starch

  Research compendium for 'Investigating Biases Associated with Dietary Starch Incorporation and Retention with an Oral Biofilm Model.'

  dental-calculusoral-biofilmreproducible-researchresearch-compendium
  Language:HTML 6

• benmarwick / teaching-replication-in-archaeology

  This repository contains the data and code for our paper: "How to use replication assignments for teaching integrity in empirical archaeology"

  archaeologyteachingbinderresearch-compendium
  Language:TeX 6

• joeroe / SWAsiaNeolithicFounderCrops

  Data and code for Arranz-Otaegui & Roe (2023), "Revisiting the concept of the 'Neolithic Founder Crops' in southwest Asia'

  research-compendiumrarchaeology
  Language:PostScript 6

• benmarwick / mjbnaturepaper

  reproducible-paperarchaeological-sciencearchaeologyresearch-compendium
  Language:R 5

• Mateusz-Grzelinski / program-synthesis-documentation

  Many resources about program synthesis

  program-synthesissynthesisrstresearch-compendium
  Language:Python 5

• trhermes / isotopes.sheep.goat.tianshan

  Research compendium for ‘Carbon and oxygen stable isotopic evidence for diverse sheep and goat husbandry strategies amid a Final Bronze Age farming milieu in the Kyrgyz Tian Shan’

  rarchaeologyzoologyisotopeskyrgyzstanresearch-compendium
  Language:R 5

• cboettig / decisions-vs-transients

  :notebook:

  research-compendiummanuscriptreproducible-researchecologydecisions
  Language:TeX 4
• neurotransmissionevolution

  dalmolingroup / neurotransmissionevolution

  Research compendium for Viscardi et al, 2020.

  bioinformaticsevolutionexpression-atlasigraphkeggnetwork-analysisneurotransmissionorthologyrresearch-compendiumstringdb
  Language:TeX 4

• MartinHinz / bayesian.demographic.reconstruction.2022

  Research compendium for ‘Bayesian inference of prehistoric population dynamics from multiple proxies: a case study from the North of the Swiss Alps’

  archaeological-sciencearchaeologyreproducible-paperreproducible-researchresearch-compendium
  Language:HTML 4

• nevrome / IfriElBaroud

  Research compendium for a contribution to ‘Human Occupation and Environmental Change in the Western Maghreb during the Last Glacial Maximum (LGM) and the Late Glacial. New Evidence from the Iberomaurusian Site Ifri El Baroud (North-east Morocco)’

  archaeologyrresearch-compendium3d-models
  Language:R 4

• stonerlab / PIQSD-SingleSpinBz

  Sources for: Numerical Simulations of a Spin Dynamics Model Based on a Path Integral Approach

  condensed-matter-physicsreproducible-researchresearch-compendiumspin-dynamics
  Language:Python 4