qtl
There are 3 repositories under qtl topic.
mmkim1210 / GeneticsMakie.jl
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Language:Julia 74neurogenomics / MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
Language:R 66- Language:R 63
- Language:R 47
- echolocatoR
RajLabMSSM / echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Language:R 30 timflutre / eqtlbma
Package to detect eQTLs jointly in multiple subgroups (e.g. tissues) via Bayesian Model Averaging.
Language:C++ 22Create LocusZoom-style plots in R.
Language:R 20- Language:R 14
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Language:R 13guilherme-pereira / QTLpoly
R package for random-effect multiple QTL mapping in autopolyploids
Language:R 9swvanderlaan / QTLToolKit
A workflow based on QTLtools to run cis- and trans-QTL analyses.
Language:Shell 6- Language:R 5
- Language:R 4
- Language:Java 4
senresearch / FlxQTL.jl
A comprehensive QTL analysis tool by multivariate linear mixed model.
Language:Julia 4- Language:Perl 3
- Language:R 3
kentavv / mapmaker
MapMaker/Exp 3.0b and MapMaker/QTL 1.1, updated to add various improvements including multithreading
Language:C 3molepi-precmed / trans-qtls
Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest
Language:R 3- Language:PLpgSQL 2
echoverse module: Statistical and functional fine-mapping functions.
Language:R 2echoverse module: Locus plot creation for fine-mapping and colocalization studies.
Language:R 2fastQTL analysis of methylation and expression data
Language:Shell 2- Language:R 2
- Language:Jupyter Notebook 1
- Language:D 1
bioinfodlsu / rice-pilaf
In Press, GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
Language:Python 1- Language:R 1
- Language:R 1
- UVIC_TFM_AGomez_2023
antoniogomez / UVIC_TFM_AGomez_2023
Scripts of Final Master Project
Language:R 0 - Language:Python 0
NathanPhipps / Guppy_Courtship_Intercross
Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.
Language:R 0zjwinn / Winn-Dissertation-Chapter-3
This is the public repository for information related to the thesis chapter of the same name as the title.
0adityamahadevaniyer / RNA-seq
RNA-seq code with Bowtie alignment and generating strain-specific counts using Emase
Language:HTMLjlboat / query_qtl_atlas
This script was designed to find any QTLs near SNPs in the Sorghum QTL Atlas
Language:Python- Language:R
