Bioinformatics Lab, De La Salle University Manila's repositories
phage-host-prediction
Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences
attack_amr
Source code for analysis of hospital wastewater metagenomic data
bioinfodlsu.github.io
Website of the Bioinformatics Lab at DLSU Manila
rice-pilaf
Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
attack_amr_pipeline
Bioinformatics pipeline for profiling anti-microbial resistance genes from hospital wastewater
samar_lite
Quick-and-dirty differential gene expression analysis pipeline that avoids computationally demanding de-novo transcriptome assembly