Arjun Biddanda's repositories
aabiddanda.github.io
Personal Website
AmpliCoNE-tool
AmpliCoNE: Ampliconic Copy Number Estimator
project_template
Template for project directories to make sure code is standardized
bth
scripts for heteroskedastic tests
Cannings_Model_Approximations
Investigating deviations from the Coalescent in the Moran Model
comp_bio_demo_2024
Demo for skype a scientist activity 2024
demes-python
Tools for describing and manipulating demographic models.
fiveMinuteStats
A repo of short "vignettes" illustrating statistical concepts; http://stephens999.github.io/fiveMinuteStats/analysis/
geosfs_empirical
Obtaining annotated SFS from publicly available datasets across multiple populations
geovar_rep_paper
Repository to replicate results from the GeoVar paper
makeScaffold
Build a haplotype scaffold for a VCF/BCF from a PED file
poibin
Poisson Binomial Probability Distribution for Python
rMCMC
Recombination MCMC
smcpp_bootstrap
Pipeline for running SMC++ on WGS data.
snakemake_demo
Demo repo for new cluster setup with snakemake (excludes configs)
stdpopsim
A library of standard population genetic models
sublinear-Li-Stephens
Calculates the probability of a haplotype given a population reference panel