phewas

There are 0 repository under phewas topic.

• mmkim1210 / GeneticsMakie.jl

  🧬High-performance genetics- and genomics-related data visualization using Makie.jl

  geneticsgenomicsjuliavisualizationmakiebioinformaticscairomakiegwasphewaslocuszoomcolocalizationfine-mappingqtllinkagejulia-languagedata-sciencemulti-ethnicv2fmultivariateopenmendel
  Language:Julia 73

• RayDebashree / metaUSAT

  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.

  summary-statisticsmultiple-traitsmeta-analysisgwasmultivariate-analysisoverlapping-samplesgenome-analysismultiple-studiesrscriptpleiotropycross-phenotypegenetic-epidemiologystatistical-geneticsscore-testmetausatphewas
  Language:R 16

• naim-panjwani / LocusFocus

  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

  gwasgwas-toolsgwas-summary-statisticseqtleqtl-mappinggtex-eqtl-associationmechanism-of-actioncis-regulationlocuszoomphewasfine-mapping
  Language:JavaScript 8

• AbbVie-ComputationalGenomics / SAIGEgds

  Scalable Implementation of generalized mixed models using GDS files in Phenome-Wide Association Studies

  gdsmixed-modelgwasphewas
  Language:C++ 7

• rivas-lab / ukbb-tools

  Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data

  ukbiobankgwasgwas-summary-statisticsgrmld-score-regressionphewasphenotyping-algorithmsglobal-biobank-engine
  Language:Jupyter Notebook 5

• pgxcentre / genetest

  Python package for efficient genetic association analyses

  bioinformaticsgeneticsstatisticsgenomicsgwasphewasregression-models
  Language:Python 3

• ammegandchips / EPoCH

  Code necessary to conduct all data prep and analysis in the EPoCH study.

  epidemiologygeneticspregnancyhealthmaternalpaternalbristolphewasstatisticsmrc-ieu
  Language:HTML 2

• mzfu / ADPRS_PheWAS

  Those are the code files for producing the PheWAS analyses in the manuscript "Phenome-Wide Association Study of Polygenic Risk Score for Alzheimer’s Disease in Electronic Health Records". Part of our analyses included sensitive genomic data. Codes to produce AD PRS were not included here.

  alzheimers-diseasephewasrprogrammingpolygenic-risk-scores
  Language:R 2

• Sung-Bong-Kang / hGMNet

  hGMNet : host Genetics and Microbe interaction Networks

  microbiomehost-genotypegene-environment-interactionsinteraction-netsphewaspiplinenetwork-analysis
  Language:Python 2

• chanwkimlab / MHC_Kor_Assoc

  Phenome-wide association study of the major histocompatibility complex region in the Korean population identifies novel association signals

  mhcgwasphewashla
  Language:Jupyter Notebook 1

• mmkim1210 / acne-genetics

  💆🏻J’ai déjà toi

  gwaslocuszoomphewas
  Language:Julia 0