CTLife

2ndGS_Pipelines

Perl and R source codes for next generation (the second generation) sequencing data analysis by integrating lots of open-source softwares.

SomeRecords

Some very useful records for me.

m6A-SAC-seq

Perl, Bash shell, and R scripts for m6A-SAC-seq data analysis.

MDisProtein

Modelling and Prediction of protein distribution on subcellular and suborganelle level.

PipiDABS

PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.

ART_Epigeome

Source codes for the ART_Epigenome project, "Epigenetic Consequences of Assisted Reproduction in the Human Offspring".

NucleosomeTurnover

Upstream and Downstream of locus-specific nucleosome turnover in adult mouse cardiomyocytes (as a instance or representation of non-proliferating mammalian cells).

Scripts_Protocols

xQTLs

Scripts for various molecular quantitative trait locus (xQTL) analysis.

CTLife.github.io

My Personal Website and Blog.

EED-HDAC

Bioinformatics analysis in EED-HDAC project, "Polycomb EED Orchestration of Heart Maturation is PRC2-independent".

MAPBS

An All-in-one and Easy-to-use DNA Methylation Analysis Pipeline for Bulk and Single-cell BS-Seq Data

Opposite-Sex-Twins_Epigenome

Opposite-Sex-Twins_Epigenome

Sequencing_DNA_RNA_Protein

Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.

sgRNA

Design genom-wide sgRNAs by using CRISPRseek.

xQTM

molecular quantitative trait methylation (QTM) analysis

Gametogenesis_Embryogenesis

Mammalian gametogenesis and embryogenesis

cfDNA-5hmC_LungCancer

Plasma cell-free DNA hydroxymethylomes discriminate disease state in EGFR-mutant non-small cell lung cancer.

single-cell-5hmC

single-cell 5hmC-Seal with combinatorial split-pool barcoding