There are 1 repository under guppy topic.
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
iOS pod about a curious fish named Guppy
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler
Scripts for Lin, Y., Darolti, I., Furman, B. L. F., Almeida, P., Sandkam, B. A., et al., Breden, F., Wright, A. E., Mank, J. E. (2022) Gene duplication to the Y chromosome in Trinidadian Guppies. Molecular Ecology. https://doi.org/10.1111/mec.16355
Scripts for Lin, Y., Darolti, I., van der Bijl, W., Morris, J., Mank, J. E. (2023) Extensive variation in germline de novo mutations in Poecilia reticulata. Genome Research
Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.
Data, script, and output used for the guppy QTL project by Nathan Phipps and Dr. Laura Stein, starting from 5/1/2020.