guppy

There are 1 repository under guppy topic.

• nanoporetech / megalodon

  Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.

  basecallingepigeneticsguppyvariant-calling
  Language:Python 191

• johnsonandjohnson / Guppy-iOS

  iOS pod about a curious fish named Guppy

  iosswiftnetworkingnetwork-monitoringurlsessionguppy
  Language:Swift 40

• sirselim / guppy_parameter_optimiser

  A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate

  basecallinggpuguppynanopore-sequencingoptimisation
  Language:Shell 31

• nanoporetech / pyguppyclient

  Python client library for Guppy

  basecallingpythonguppynanopore
  Language:Python 30

• novoalab / modPhred

  modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data

  basecallingdnafast5guppymodificationsnanoporeon-the-flyrna
  Language:Python 15

• colindaven / guppy_on_slurm

  Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

  guppyslurmfastqnanoporenanopore-sequencing
  Language:Shell 14

• Lin-Yuying / GuppyGeneDuplication

  Scripts for Lin, Y., Darolti, I., Furman, B. L. F., Almeida, P., Sandkam, B. A., et al., Breden, F., Wright, A. E., Mank, J. E. (2022) Gene duplication to the Y chromosome in Trinidadian Guppies. Molecular Ecology. https://doi.org/10.1111/mec.16355

  gene-duplicationguppysexually-antagonistic-selection
  Language:Jupyter Notebook 2

• Lin-Yuying / GuppyGermlineDNMs

  Scripts for Lin, Y., Darolti, I., van der Bijl, W., Morris, J., Mank, J. E. (2023) Extensive variation in germline de novo mutations in Poecilia reticulata. Genome Research

  guppydenovo-mutation
  Language:Jupyter Notebook 1

• NathanPhipps / Guppy_Courtship_Intercross

  Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.

  guppypoeciliareticulatabehaviorcourtshipqtlintercross
  Language:R 0

• NathanPhipps / GuppyQTL

  Data, script, and output used for the guppy QTL project by Nathan Phipps and Dr. Laura Stein, starting from 5/1/2020.

  guppypoeciliareticulataqtlbehaviormorphologyintercross
  0