variani

lme4qtl

Mixed models @lme4 + custom covariances + parameter constraints

finemapr

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

cpca

Common PCA

biglmmz

Low-rank linear mixed models (LMMs) powered by bigstatsr

matlm

linear models (lm) in matrix form: testing multiple predictors faster

paper-neff

Scripts for the Neff paper

qq

Q-Q plots, inflation and friends

rexamples

R code for copy & paste

rstats4noobs

Notes about R (rstats)

Workshop_UNAM

Workshop on association mapping at the UNAM, 2023

awesome-mixed-models

A (not yet) curated list of awesome Linear Mixed Model resources

bigcov

Covariance/Correlation for big data in base R

docker-examples

Docker examples

lme4noobs

Learn how to use R package lme4

talks

My public talks

bioinf4noobs

brglm2

Estimation and inference from generalized linear models using explicit and implicit methods for bias reduction

dotfiles

configuration files

ds4noobs

Data Science (DS) notes

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

pixelart

R package and Shiny app to make pixel art models and to resize images

Post-QC

Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.

python4noobs

Learn python

RcppChoose

Rcpp/R package that combines c++/R code

RcppLinker

R package to showcase linking to external Rcpp functions

RcppStatGen

Rcpp code for Statistical Genetics

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

rgwas

Learn and validate subtypes from multiple traits

vimium

The hacker's browser.

wlm

linear model (lm) weighted in many ways: wls, gls, lmm1