variani

lme4qtl

Mixed models @lme4 + custom covariances + parameter constraints

finemapr

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

cpca

Common PCA

biglmmz

Low-rank linear mixed models (LMMs) powered by bigstatsr

matlm

linear models (lm) in matrix form: testing multiple predictors faster

rexamples

R code for copy & paste

rstats4noobs

Notes about R (rstats)

docker-examples

Docker examples

paper-neff

Scripts for the Neff paper

Workshop_UNAM

Workshop on association mapping at the UNAM, 2023

awesome-mixed-models

A (not yet) curated list of awesome Linear Mixed Model resources

bigcov

Covariance/Correlation for big data in base R

bioinf4noobs

brglm2

Estimation and inference from generalized linear models using explicit and implicit methods for bias reduction

dotfiles

configuration files

ds4noobs

Data Science (DS) notes

ggpointdensity

:chart_with_upwards_trend: :bar_chart: Introduces geom_pointdensity(): A Cross Between a Scatter Plot and a 2D Density Plot.

lme4noobs

Learn how to use R package lme4

pixelart

R package and Shiny app to make pixel art models and to resize images

Post-QC

Post variant-calling QC pipeline for orienting cohort data with a reference file. Additional steps for merging and phasing with a reference panel.

python4noobs

Learn python

qq

Q-Q plots, inflation and friends

RcppChoose

Rcpp/R package that combines c++/R code

RcppLinker

R package to showcase linking to external Rcpp functions

RcppStatGen

Rcpp code for Statistical Genetics

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

rgwas

Learn and validate subtypes from multiple traits

talks

My public talks

vimium

The hacker's browser.

wlm

linear model (lm) weighted in many ways: wls, gls, lmm1