colocalization
There are 0 repository under colocalization topic.
boxiangliu / locuscomparer
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Language:R 91mmkim1210 / GeneticsMakie.jl
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
Language:Julia 74- Language:C++ 40
- echolocatoR
RajLabMSSM / echolocatoR
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Language:R 30 - Language:R 25
Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).
Language:R 13alexiaales / SpotitPy
An automated tool for Object-based colocalization in fluorescence microscopy images.
Language:Python 4echoverse module: Locus plot creation for fine-mapping and colocalization studies.
Language:R 2rsenft1 / FISH-IHC-Colocalization-in-ImageJ
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
Scaramir / HD_colocalization
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
Language:Python 2tomouellette / pgxdisease
Analyses for the publication titled "Integrating disease and drug-related phenotypes for improved identification of pharmacogenomic variants"
Language:R 1- Language:R 1
BCMSLab / colocrart
Code for the PeerJ paper (colocr: an R package for conducting co-localization analysis on fluorescence microscopy images)
Language:R 0CBFLivUni / Epigenetics-OA-Risk-Human-Skeletal-Dev
Methylation and mqtl analysis of the developing knee
Language:R 0- Language:R 0
Software-Engineering-BBSRC-Group-6 / auto-coloc-gui
Image processing desktop GUI tool to automate colocalization analysis across multiple channels on a fluorescence image
Language:Python 0strug-hub / UKBB_spirometry_on_COPD
Colocalization analysis of Meconium Ileus Genome-Wide Association Study (GWAS) (Gong et al., 2019) signal around SLC26A9 with spirometry association analysis in the UK Biobank and Spirometa Consortium (Shrine et., 2019) around the same region to elucidate whether there is a shared genetic contribution to disease
Language:HTML 0bencardoen / Colocalization.jl
Colocalization metrics and distances for images or their sparse representations.
Language:Juliachristacaggiano / caviar
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
Language:C++MahShaaban / colocr_app
A shiny app for conducting co-localization analysis.
Language:Rtheresaswayne / nuclei-overlap
ImageJ scripts for analyzing nuclei intensity and overlap in brain sections
Language:Python- Language:Jupyter Notebook
