whole-genome-alignment

There are 1 repository under whole-genome-alignment topic.

medvedevgroup / SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
alignment bioinformatics comparative-genomics de-bruijn-graphs genomics graph-algorithms locally-collinear-blocks whole-genome-alignment
Language:C++ 135
gsneha26 / SegAlign
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
whole-genome-alignment gpu-acceleration lastz cuda tbb comparative-genomics aws-ec2 genomics genome-alignments genome-aligner
Language:C++ 60
gsneha26 / Darwin-WGA
Co-processor for whole genome alignment
whole-genome-alignment aws-f1 fpga-accelerator tbb
Language:Verilog 11
fmalmeida / plot_nucmer
A simple script to run an alignment with nucmer and visualise its results.
plot r ggbio circular-visualization whole-genome-alignment nucmer conda
Language:Shell 7
KiranJavkar / PRAWNS
PRAWNS: A fast and scalable bioinformatics tool that generates an efficient pan-genome representation of closely related whole genomes to provide a concise list of genomic features
population-genomics comparative-genomics whole-genome-genotyping pan-genome-analysis bioinformatics genomics computational-biology antimicrobial-resistance bacterial-gwas antibiotic-resistance whole-genome-sequencing whole-genome-alignment genome-analysis parallel-programming association-studies microbial-genomics
Language:C++ 7
henryjuho / WGAbed
A package for handling whole genome alignments by Pádraic Corcoran and Henry Barton
genome-alignment bed bed-format whole-genome-alignment
Language:Python 6
oist / plessy_pairwiseGenomeComparison
Draft workflow for pairwise genome comparison
bioinformatics comparative-genomics genomics nextflow whole-genome-alignment
Language:Nextflow 4
MafaldaSFerreira / Atlherr_inversion_evol
Evolutionary genomics of chromosomal inversions in Atlantic herring
dnds-estimation dxy evolutionary-biology fst gatk4 genomics genotype inversions long-reads nucleotide-diversity pca phylogenomics recombination short-reads site-frequency-spectrum transposable-elements whole-genome-alignment
Language:R 1
charles-plessy / pairgenomealign
Pairwise genome alignment
bioinformatics genomics nf-core pairwise-alignment comparative-genomics nextflow whole-genome-alignment
Language:Nextflow