Ensembl Project's repositories
ensembl-vep
The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants
ensembl-rest
Language agnostic RESTful data access to Ensembl data over HTTP
ensembl-hive
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
ensembl-compara
The Ensembl Compara Perl API and SQL schema
plant-scripts
Scripting analyses of genomes in Ensembl Plants
ensembl-variation
The Ensembl Variation Perl API and SQL schema
ensembl-webcode
The code to run an Ensembl website
ensembl-analysis
Modules to interface with tools used in Ensembl Gene Annotation Process and scripts to run pipelines
ensembl-client
Ensembl beta client
ensembl-production
Ensembl Production code
ensembl-genomio
Pipelines to turn basic genomic data into Ensembl cores and back
public-plugins
Plugins for an Ensembl website
ensembl-datacheck
Code for checking Ensembl databases during release production
ensembl-genes
Python Ensembl Gene Annotation code source repository
gene_symbol_transformer
Transformer model for gene symbol assignment of protein coding sequences
ensembl-cdm-docs
Core data modeling documentation repository.
ensembl-metadata-api
ensembl_genome_metadata schema SQLAlchemy ORM layer
ensembl-production-metazoa
Metazoan production helper library and script to import ad-hoc annotations.
ensembl-website-help-and-docs
documentation for the new Ensembl site
ensembl-dauphin-style-compiler
"dauphin" style-compiler for genome browser
ensembl-hypsipyle
Ensembl Variation GraphQL server
ensemblgenomes.org
Source code for ensemblgenomes.org
regulation-workflows
Ensembl Regulation workflows
tagene
Repository hosting the TAGENE annotation pipeline