Baliga lab at the Institute for Systems Biology's repositories
network_portal
A web-app for archiving and exploring gene-regulatory networks.
DRonA_MLSynergy
Algorithms for drug response analysis and prediction of outcome of novel drug interactions
egrin2_django
Django web application for EGRIN 2.0
tnseq_processing
TNSeq processing package for R
Global_Search
Code repository for the Coral Global Search project.
tfbsdb2-DataProcess
Data process for constructing the transcription factor (TF) to target gene interactions database.
bwa_pipeline
Genomics pipeline based on Burrows Wheeler Aligment
Cancer-miRNA-Regulatory-Network
A database containing the predictions for the Cancer miRNA-Regulatory Network.
duffy_scripts
Automation scripts for running DuffyNGS based RNA seq analysis
GBM_Atlas
Repository for the manuscript titled An atlas of causal and mechanistic drivers of interpatient heterogeneity in gliomas predicts treatment response based on cell states
glioma_web
Website backing publication.
Metabolic-Model-of-Syntrophy-for-Dv-and-Mm
Syntrophic community model generated by integrating genome-scale metabolic network models of DvH and Mmp.
miner_webapi
Generic data interface for ananlysis data generated with MINER
mirvestigator-rust
Standalone implementation of miRvestigator in Rust
miRvestigator_www
A web server version of the miRvestigator framework.
mmSYGNAL-risk-prediction-models
ML risk prediction models generated from mmSYGNAL
NanoVar-Micro
Nanopore Microbial Variant Calling Pipeline
pf1010-web
Aquaponics web application for Project Feed 1010
resr_pipeline
SNP calling pipeline based on ResR
rnaseq_starsalmon_slurm
RNA-Seq pipeline based on STAR Salmon for SLURM clusters
wp_minerapi
Wordpress plugin to display data from a MINER web API
wp_tfbsdb2
Wordpress plugin for integrating TFBSDB2 API