SIB Swiss Institute of Bioinformatics

training-collection

Collection of bioinformatics training materials

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

intermediate-python-training

glittr

A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

intro-machine-learning-training

containers-introduction-training

Course website "Docker and Singularity for reproducible research: getting started with containers"

NGS-variants-training

GitHub for the SIB courses NGS - Genome variant analysis

NGS-introduction-training

SIB course that introduces analysis of NGS data

NGS-longreads-training

unix-first-steps-training

SIB First Steps with UNIX course

sparql-examples

A set of SPARQL examples that are used in different SIB resources

containers-snakemake-training

Course website "Introduction to Containers and Snakemake for Reproducible Research"

kgsteward

Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)

epinorm

Scripts for processing of disease outbreak records as part of the MOOD project.

sparql-editor

💫 A standard web components to easily deploy a SPARQL query editor for specific SPARQL endpoints using the popular YASGUI editor.

hugo-pathogens-portal

Hugo pathogens portal theme

pftools

A suite of tools to build and search generalized profiles

reproducible-analysis-training

SIB course on FAIR analysis with Quarto, GitHub and Zenodo

single-cell-python-training

sparql-examples-utils

A tool to maintain and test your SPARQL examples

spatial-transcriptomics-training

biodiversity-bioinformatics

Course website "Biodiversity bioinformatics: from large-scale phylogenomics to gene families and functions"

advanced-r-training

cancer-variants-training

course_website_template

Template to generate course websites in template

dsQueryLibraryServer

ena-seqdata-training

SIB course on interacting with ENA

glittr-stats

General statistics of Glittr.org. Comes with the manuscript.

queryLibrary

Collection of OMOP predefined queries.

resourcex