SIB Swiss Institute of Bioinformatics

training-collection

Collection of bioinformatics training materials

single-cell-training

SIB course on single cell transcriptomics by mostly using the Seurat pipeline

first-steps-with-python-training

repository of the 3-day course "First steps with Python in Life Sciences" from SIB-training

intermediate-python-training

glittr

A web application for finding and comparing bioinformatics training materials on GitHub and GitLab

containers-introduction-training

Course website "Docker and Singularity for reproducible research: getting started with containers"

intro-machine-learning-training

intro-bayesian-statistics-training

NGS-introduction-training

SIB course that introduces analysis of NGS data

sparql-training

This repository contains training material for querying SIB (Swiss Institute of Bioinformatics) resources with SPARQL.

enrichment-analysis-training

Course material for Enrichment analysis course by SIB

dsSwissKnife

kgsteward

Knwowledge Graph Steward - Command line tool to help manage RDF store (GraphDB)

multiomics-data-analysis-and-integration-training

dsSwissKnifeClient

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

pyrheadb

Repository for the Python package intended to facilitate access to Rhea data from Python

sib-software-stack

Scripts and documentation to deploy the SIB software stack

single-cell-python-training

wikidata-orthologs-bot

Bots and scripts to enrich Wikidata using SIB orthologs databases, such as OMA.

consensusOPLS

course_template

a template for SIB-training course repository (when there is no website attached, otherwise go to https://github.com/sib-swiss/course_website_template )

ena-seqdata-training

SIB course on interacting with ENA

epinorm-genbank

Parser for GenBank files

glittr-stats

General statistics of Glittr.org. Comes with the manuscript.

opal-docker-sib

open-data-registry

A registry of publicly available datasets on AWS

sendcrypt

Modern and easy to use client to securely send encrypted sensitive data by SFTP. Linux, MacOS, and Windows.

SPARQL_course

Recon4IMD SPARQL introduction course

spatial-transcriptomics-training