EmanuelSoda

blog_data_science_bioinfo

ML_Homework

Homework Machine Learning

CellViT

CellViT: Vision Transformers for Precise Cell Segmentation and Classification

ScreenR

An R package that enables the user to perform High Throughput Biological Screening.

atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

awesome-ds-setting

Data science setting for a new machine

bayesian_rmodeling_example

In this repo is present a simple example of how to perform bayesian modeling of hierarchical data

chipseq

ChIP-seq peak-calling, QC and differential analysis pipeline.

docker-conda-template

A template for the integration of conda with docker/singularity

EmanuelSoda

Profile

FUCCI_ML

Intro-to-ChIPseq

Intro to ChIPseq using HPC

ML_R

Netflix_Analysis

Analysis of Netflix

nf-STAR-TEtranscript

This project aims to develop an nf-core nextflow pipeline to conduct genes and transposable elements from RNA-seq data

Pinguini

programmi-elementi-bioinformatica

Programmi

ProgrammingPython

Project Scientific Programming Python

ProgrammingR

Scientific Programming R project

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

scBERT

spatialtranscriptomics

Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.

TextRL

Reinforcement learning in text generation with transformers