omero

There are 2 repositories under omero topic.

• ome / openmicroscopy

  OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.

  databaseimagejavaomeropythonserver
  Language:Java 202

• TheJacksonLaboratory / ezomero

  A module with convenience functions for writing Python code that interacts with OMERO.

  omeroomero-serveromero-apipythonimaging-solutions
  Language:Python 39

• tlambert03 / napari-omero

  Browse your OMERO database from within napari.

  naparinapari-pluginomero
  Language:Python 34

• ome / docker-example-omero

  OMERO Docker compose example

  dockerdeploymentomeroomero-serveromero-web
  Language:Shell 24

• ome / omero-py

  Python project containing Ice remoting code for OMERO

  componentlibomeropython
  Language:Python 24

• ome / omero-documentation

  Sphinx-based documentation for the Open Microscopy Environment

  omeomerodocumentation
  Language:Python 22

• ome / omero-iviewer

  An OMERO.web app allowing to view images

  omerowebapp
  Language:JavaScript 19

• ome / devspace

  Continuous integration tool for OME projects

  jenkinsdockerdevscontinuous-integrationomero
  Language:Shell 18

• ome / omero-ms-zarr

  Experimental micro-service for implementing the Zarr spec over HTTP

  omerozarriomicroservice
  Language:Java 18

• ome / omero-cli-transfer

  An OMERO CLI plugin for creating transfer packets between OMERO servers.

  omeroomero-importomero-server
  Language:Python 17

• ome / omero-web

  Django-based OMERO.web client

  clientdjangoomeropythonweb
  Language:Python 17

• ome / omero-cli-zarr

  omerozarrngffome-zarr-converter
  Language:Python 16

• ome / omero-figure

  An OMERO.web app for creating Figures from images in OMERO

  omerowebapp
  Language:JavaScript 16

• NL-BioImaging / biomero

  BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

  omeroslurmbioimagingcytominefairhigh-content-screeninghigh-performance-computinghigh-throughput-screeningimage-analysisbiaflowsbiomeropython
  Language:Python 14

• ome / omero-server-docker

  OMERO.server production docker image

  omeopenmicroscopyomeroomero-serverdocker
  Language:Shell 14

• ome / omero-scripts

  Core OMERO Scripts

  omeropythonscripts
  Language:Python 12

• ome / omero-deployment-examples

  Examples playbooks for installing OMERO with Ansible and Docker

  omeroplaybookansibledockerexamplecompose
  11

• GReD-Clermont / simple-omero-client

  Maven project to easily connect to OMERO.

  javamavenomero
  Language:Java 9

• openmicroscopy / omero-example-scripts

  Plugins for OMERO

  omeroscripts
  Language:Python 9

• BiologyTools / BioGTK

  A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

  bio-formatsbiologygtkimage-stacksimagejmicroscopyroicross-platformomeroimagej-roiimagej-tiffwhole-slide-imagesegment-anythingsegment-anything-modelopenslidepluginsgeojsonqupathsam-2
  Language:C# 8

• ome / omero-metadata

  OMERO plugin for metadata manipulation https://www.openmicroscopy.org/omero/

  metadataomerocli
  Language:Python 8

• hip-satomi / microbeSEG

  Deep learning-based instance segmentation tool for roundish objects in 2D and 2D+t data

  cell-segmentationmicrobesnucleus-segmentationdeep-learningomerosegmentationtime-lapse-imaging
  Language:Python 7
• kubernetes-omero

  manics / kubernetes-omero

  Kubernetes Helm charts for OMERO

  kubernetesomeroomehelmopenmicroscopyopensciencehelm-chartdata-managementimage-managementkubernetes-helm-charts
  Language:Python 7

• ome / omero-insight

  Gradle project containing insight java client for OMERO

  omeroclientguijava
  Language:Java 7

• sorgerlab / OMERO.forms

  Extension to OMERO.web to enhance metadata input and provide provenance

  omerowebapp
  Language:Python 7

• ome / omero-web-docker

  OMERO.web production docker image

  omeomeroopenmicroscopyomero-webdocker
  Language:Makefile 6

• TheJacksonLaboratory / jax-omeroutils

  A module and scripts for working with OMERO

  omero-importomeroimaging-solutions
  Language:Python 6

• GReD-Clermont / omero_macro-extensions

  imagejomeroimagej-macro
  Language:Java 5

• NFDI4BIOIMAGE / omero-vitessce

  OMERO.web plugin for the Vitessce multimodal data viewer.

  multimodalnfdi4bioimageomeroomero-webspatial-omicsspatial-transcriptomicsvitessce
  Language:Python 5

• ome / omero-gallery

  omerowebapp
  Language:JavaScript 5

• ome / omero-mapr

  An OMERO.web app allowing to browse the data through attributes linked to the image

  imageomeropluginviewer
  Language:Python 5

• ome / omero-server

  Gradle project containing main server logic for OMERO

  omerolibcomponentserverjar
  Language:Java 5

• ome / rOMERO-gateway

  OMERO R Gateway

  omerorjava
  Language:R 5

• TheJacksonLaboratory / omero_for_developers

  material for the "OMERO for developers" workshop.

  imaging-solutionsomero
  Language:Jupyter Notebook 5

• hip-satomi / ObiWan-Microbi

  Omero based integrated Workflow for annotating Microbes in the Cloud

  annotation-toolcell-segmentationdata-managementdeep-learningdockerhuman-in-the-loopmicrobesomeroplatform-independent
  Language:Dockerfile 4

• NL-BioImaging / biomero-scripts

  Scripts for use with BIOMERO

  biaflowsbioimagingbiomerocytominefairhigh-content-screeninghigh-performance-computinghigh-throughput-screeningimage-analysisomeroslurm
  Language:Python 4