Okinawa Institute of Science & Technology's repositories
BioinfoUgrp
OIST Bioinfo user group
GenomicBreaks
Pairwise Alignment Breakpoint Analysis
plessy_pairwiseGenomeComparison
Draft workflow for pairwise genome comparison
LuscombeU-CAGE_libraries
Quality control and processing of CAGE libraries
TER-UCE-DB
The Termite UCE Database. Centralization of termite UCE data and assignation of unique identification code.
BioinfoUgrp_UnixGoodies_Images
Singularity images with cool Unix tools to be exported as modules in HPC clusters
BrainComputation
Brain Computation: A Hands-on Guidebook
joint-tracking-simulation
Source code for running a joint tracking model and its analysis
LuscombeU_OikScrambling
Scrambling paper analysis in R
Oikopleuradioica_genomeannotation
Genome annotation of Oikopleura dioica from different geographical locations
SallanU_impressiontray
Dental impression tray for animals (Wibisana et al., 2023)
BioinfoUgrp_DebianMed_Images
GitHub actions workflow to create Debian Med images for OISTs bioinformatics user group.
Chakraborty_GoCD_Configs
Repository containing pipeline configuration files in YAML format for GoCD server configuration.
cpr-samlauth-role-map
Role mapping feature for Drupal 8 SAML Authentication module
LuscombeU_last-flask
Remotely run our LAST Nextflow pipeline
MuonDetector
Code to run the Arduino-based muon detectors, written in LabVIEW
plessy_CAGEscan_Nextflow
NextFlow pipeline for CAGEscan
plessy_nf_GenomicBreaks
Draft Nextflow pipeline to convert alignment files and extract basic stats.
plessy_oikgenomes_drat
Drat repository for hosting oik BSgenome packages
plessy_splitspliceleaderpe
Split paired-end read files in two according to presence of splice leader in the first read.
public_preview
Fork of drupal/public_preview with Drupal 10 compatibility
rate_limits
Fork of drupal/rate_limits with Drupal 10 compatibility
topcorneR
Plan and analyse large-scale liquid transfers
VisualStimulation
matlab gui for vstim with psychophysics toolbox