Okinawa Institute of Science & Technology (oist)

Okinawa Institute of Science & Technology

oist

Geek Repo

Location:Okinawa, Japan

Home Page:http://www.oist.jp/

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Okinawa Institute of Science & Technology's repositories

optinist

calcium imaging pipeline tool

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BioinfoUgrp

OIST Bioinfo user group

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GenomicBreaks

Pairwise Alignment Breakpoint Analysis

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plessy_pairwiseGenomeComparison

Draft workflow for pairwise genome comparison

LuscombeU-CAGE_libraries

Quality control and processing of CAGE libraries

TER-UCE-DB

The Termite UCE Database. Centralization of termite UCE data and assignation of unique identification code.

BioinfoUgrp_UnixGoodies_Images

Singularity images with cool Unix tools to be exported as modules in HPC clusters

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BrainComputation

Brain Computation: A Hands-on Guidebook

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joint-tracking-simulation

Source code for running a joint tracking model and its analysis

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LuscombeU_OikScrambling

Scrambling paper analysis in R

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Oikopleuradioica_genomeannotation

Genome annotation of Oikopleura dioica from different geographical locations

SallanU_impressiontray

Dental impression tray for animals (Wibisana et al., 2023)

BioinfoUgrp_DebianMed_Images

GitHub actions workflow to create Debian Med images for OISTs bioinformatics user group.

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Chakraborty_GoCD_Configs

Repository containing pipeline configuration files in YAML format for GoCD server configuration.

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cpr-samlauth-role-map

Role mapping feature for Drupal 8 SAML Authentication module

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iSciComp

JupyterBook: Introduction to Scientific Computation

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LuscombeU_last-flask

Remotely run our LAST Nextflow pipeline

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MuonDetector

Code to run the Arduino-based muon detectors, written in LabVIEW

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plessy_CAGEscan_Nextflow

NextFlow pipeline for CAGEscan

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plessy_nf_GenomicBreaks

Draft Nextflow pipeline to convert alignment files and extract basic stats.

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plessy_oikgenomes_drat

Drat repository for hosting oik BSgenome packages

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plessy_splitspliceleaderpe

Split paired-end read files in two according to presence of splice leader in the first read.

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public_preview

Fork of drupal/public_preview with Drupal 10 compatibility

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rate_limits

Fork of drupal/rate_limits with Drupal 10 compatibility

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topcorneR

Plan and analyse large-scale liquid transfers

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VisualStimulation

matlab gui for vstim with psychophysics toolbox

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zen

Fork of drupal/zen with Drupal 10 compatibility

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