gwas-summary-statistics
There are 2 repositories under gwas-summary-statistics topic.
statgen / locuszoom
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
Language:JavaScript 149stephenslab / rss
Regression with Summary Statistics.
Language:MATLAB 46Kukuster / SumStatsRehab
GWAS summary statistics files QC tool
Language:Python 32- Language:Shell 21
RayDebashree / PLACO
A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics
Language:R 19- Language:R 17
- Language:R 16
- Language:R 16
- Language:C++ 11
- Language:Shell 10
- Language:Python 9
mancusolab / FactorGo
Software to infer latent pleiotropic components from GWAS summary data
Language:Python 9naim-panjwani / LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
Language:JavaScript 8- Language:Vue 7
- mvpmmLanguage:R 6
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PriyaLakr / Manhattan-plot
Script for designing a manhattan plot.
Language:Python 5rivas-lab / ukbb-tools
Tools for preprocessing, QC, and preliminary analyses from raw UK BioBank data
Language:Jupyter Notebook 4- Language:R 2
- degas-risk
Polygenic risk modeling with latent trait-related genetic components
Language:Jupyter Notebook 2 - Language:Python 1
amorenooya / MasterThesis
R code used for the master thesis entitled "Germline variants associated with prognosis of patients with non muscle invasive bladder cancer".
- Language:Shell 1
lightning-auriga / gwas-winners-curse
tool for probabilistic correction of Winner's Curse in two-stage GWAS
Language:R 1A web service to upload and share GWAS results with LocusZoom.js
Language:Python 1adRn-s / ukbbgwas
Explore SNVs associated with any of UK BioBank Phenotypes, results were made publicly available by: http://www.nealelab.is/uk-biobank
Language:R 0matthijsz / pysumstats
Python package for reading, combining, meta-analyzing, and saving GWAS summary statistics data.
Language:Python 0Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.
Language:R 0Sung-Bong-Kang / Simple_MR
Easy and simple mendelian randomization pipeline using GWAS summary statistics.
Language:Shell 0- Language:R 0
garethmarkel / PRScs.jl
Julia implementation of Ge et al's PRScs
Language:Juliaweinstockj / filter_somatic_variants_gwas_topmed
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.
Language:Go
