eqtl-mapping

There are 0 repository under eqtl-mapping topic.

• soedinglab / tejaas

  Tejaas - a tool for discovering trans-eQTLs

  trans-eqtlgene-expressionreverse-regressioneqtleqtl-mappinggtex
  Language:C 9

• naim-panjwani / LocusFocus

  Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

  gwasgwas-toolsgwas-summary-statisticseqtleqtl-mappinggtex-eqtl-associationmechanism-of-actioncis-regulationlocuszoomphewasfine-mapping
  Language:JavaScript 8

• BrunildaBalliu / FastGxC

  Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.

  genomicstranscriptomicseqtl-mappingeqtl
  Language:R 7

• hruffieux / atlasqtl

  atlasqtl R package - Fast global-local hotspot QTL detection

  hierarchical-modelhorseshoe-prioreqtl-mappinghotspotvariable-selectionvariational-inference
  Language:R 4

• pllittle / CSeQTL

  Cell type-specific eQTL mapping

  gene-expressionrna-seqgenomicscell-typeseqtl-mappingphased-genotypesenrichment-analysis
  Language:HTML 3

• pllittle / CSeQTLworkflow

  This readme repository contains sample codes for executing steps within our manuscript

  deconvolutioneqtl-mappingrna-seqcibersorticedtgene-expression
  Language:HTML 3

• dvav / eQTLBookChapter

  Book chapter on Bayesian eQTL mapping using Stan

  bayesian-variable-selectionglobal-local-shrinkagehorseshoe-priorrna-seqeqtl-mappingprobabilistic-programmingstanrstanrstatsblack-box-bayesian-inference
  Language:R 1

• Genome3d / blood-metabolites-regulation

  3d-genomeeqtl-mappingmetabolomegene-regulationhi-cblood
  Language:Python 1

• jawa23bio / cEpiReg

  Our comprehensive database integrates data from scRNA seq and sc-ATAC seq, identifying cis-regulatory elements (CREs) through comparison with ENCODE, Epimap, GWAS Catalog, and other datasets. By connecting transcription factors (TFs), CREs, and target genes, cEpiReg unveils hidden regulatory links crucial for understanding AD pathogenesis.

  atac-seqdatabaseepigenetic-dataeqtl-mappingscrna-seq-analysis
  Language:HTML 1

• maxozo / eqtl

  bulk-rna-seqeqtleqtl-mappingscrna-seq
  Language:Python