Crawford Lab

BANNs

Code and simulations using biologically annotated neural networks

i-LDSC

Code and simulations using interaction-LD score regression

mvMAPIT

The multivariate MArginal ePIstasis Test

callback

Calibrated clustering via knockoffs for single-cell genomics

SINATRA

A statistical framework for feature selection and association mapping with 3D shapes

SINATRA-Pro

Topological data analytic approach for discovering biophysical signatures in protein dynamics

multio-viz

A platform for the interactive assessment of gene regulatory networks

ashapesampler

R package for generating synthetic shapes and images using the α-shape sampler

callbackreproducibility

GOALS

Code and tutorials for implementing the GlObal And Local Score

ltsim

A liability threshold linear mixed model simulation tool for case-control studies.

SINATRA_AoAS_Results

Reproducibility repo for the simulation and real data results in the SINATRA manuscript set to appear in AoAS.

SINATRA_Pro_Paper_Results

Reproducibility repo for the simulation and real data results in the SINATRA Pro manuscript

ashapesampler_paper_results

Code to reproduce analyses and results provided in the alpha shape sampler paper beyond what is given in the R package.