twas
There are 2 repositories under twas topic.
mancusolab / twas_sim
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
Language:Shell 26- Language:Shell 21
- Language:C++ 12
- Language:Jupyter Notebook 12
jinghuazhao / EWAS-fusion
Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
Language:R 12tjiagoM / gtex-transcriptome-modelling
Multilayer modelling of the human transcriptome and biological mechanisms of complex diseases and traits
Language:Jupyter Notebook 10szcf-weiya / MTWAS
R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
Language:R 9- Language:R 8
asthmacollaboratory / sage-geuvadis-predixcan
Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS
Language:R 2- LocusXcanR
amanda-tapia / LocusXcanR
LocusXcanR: an R package that creates an R Shiny application that aids TWAS interpretation, can be extended to other ‘omics data, and highlights R Shiny’s effectiveness at presenting results in an approachable, interactive, and visual format.
Language:R 1 danielsarj / TOPMed_MESA_crosspop_portability
Optimizing transcriptome prediction models for use in multi-ethnic TWAS using multivariate adaptive shrinkage.
Language:R 1- Language:Python 1
- Language:R 0
- Language:Shell 0
christacaggiano / caviar
Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.
Language:C++
