genetic-epidemiology

There are 1 repository under genetic-epidemiology topic.

• RayDebashree / PLACO

  A statistical test of pleiotropic effect of a genetic variant on two traits using GWAS summary statistics

  pleiotropystatistical-geneticsmultiple-traitsmeta-analysisoverlapping-samplesgwas-summary-statisticsgenetic-epidemiologyrscriptcross-phenotypegenetic-overlapgwas-toolsfrequentist-methodsmixture-distributions
  Language:R 20

• RayDebashree / metaUSAT

  metaUSAT is a data-adaptive statistical approach for testing genetic associations of multiple traits from single/multiple studies using univariate GWAS summary statistics.

  summary-statisticsmultiple-traitsmeta-analysisgwasmultivariate-analysisoverlapping-samplesgenome-analysismultiple-studiesrscriptpleiotropycross-phenotypegenetic-epidemiologystatistical-geneticsscore-testmetausatphewas
  Language:R 16

• corbinq / GAMBIT

  Tool for integrative gene-based association analysis using GWAS summary stats

  gwasgwas-summary-statisticsgene-basedgenetic-analysistwasintegrative-analysisfunctional-annotationgenetic-epidemiologyregulatory-elements
  Language:C++ 11

• RayDebashree / GWAStools

  A curated list (with links) of useful tools for genome-wide association analysis.

  gwasgwas-catalogmanhattan-plotqqplotgenome-analysisgenetic-epidemiologygwas-toolslocuszoomswissmeta-analysismetalemmaxskatmmlr
  9

• biomguler / G-WASPiper

  This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.

  genetic-epidemiologygenomic-data-analysisgenotypinggwas
  Language:R 2

• RayDebashree / mvtests

  mvtests: a suite of functions for testing genetic associations of multiple traits (a.k.a. cross-phenotype associations)

  cross-phenotypemultiple-traitsproportional-odds-regressiongwasgwas-toolsgenome-analysisstatistical-geneticsstatistical-testsgenetic-epidemiologymultivariate-analysis
  Language:R 2

• RayDebashree / USAT

  USAT uses a data-adaptive weighted score-based test statistic for testing association of multiple continuous phenotypes with a single genetic marker.

  multiple-phenotypesgwaspleiotropymultivariate-analysismanovacross-phenotypestatistical-geneticsscore-testgenome-analysisrscriptgenetic-epidemiologyusat
  Language:R 1

• RayDebashree / GxE

  Joint meta-analysis of 2-df gene and gene-environment tests in GWAS.

  meta-analysisstatistical-geneticsgenetic-epidemiologygwas-toolsgwas-summary-statisticsgene-environment-interactiongxe
  Language:R 0

• RayDebashree / POM-PS

  POM-PS tests for genetic associations of secondary traits from case-control GWAS.

  cross-phenotypesecondary-traitsmultiple-traitspropensity-scoreproportional-odds-regressiongwascase-controlgenome-analysisstatistical-geneticsgenetic-epidemiologypompsstatistical-tests
  Language:R 0

• giffordlabcvr / RABV-GLUE-WEB

  public interactive website layered on top of RABV-GLUE / NCBI-RABV-GLUE projects.

  comparative-genomicsdata-oriented-designepidemiologygenetic-epidemiologymicrobial-genomicsopen-sciencerabiesreproducible-researchvirus-evolution
  Language:HTML