biomguler's repositories
G-WASPiper
This repository is my collection of pipelines for basic GWAS analysis, written in R to simplify, please cite original tools/approaches referred in the pipelines.
awesome-multitrait-gwas
List of software packages for multi-trait / multiple-trait / multivariate / high-dimensional GWAS
bioc-intro
Bioconductor data science introduction
biomguler.github.io
Personal page
clonal-hematopoiesis
This is the repository accompanying the pre-print titled, "Genome-wide analyses of 200,453 individuals yield new insights into the causes and consequences of clonal hematopoiesis" (https://www.medrxiv.org/content/10.1101/2022.01.06.22268846v1).
fastreeR
Phylogenetic, Distance and Other Calculations on VCF and Fasta Files
GenoTools
A suite of tools for processing genotype data. Includes calling genotypes from .idat to plink (ped), sample/case-control variant QC steps, ancestry estimation. UNDER DEVELOPMENT
gps_cpp
C++ code for calculating the GPS statistic.
gwaslab
A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/
hybridgwais
Fast epistasis screening software using hardware accelerators (incl. FPGA and GPU)
i-LDSC
Code and simulations using interaction LD score regression
IMMEnSE-website-v02
The IMMEnSE Consortium Website
multi-ancestry-pwmr
Code for GBMI trans-ancestry proteome Mendelian randomization satellite paper
nf-pipeline-regenie
GWAS and rare variants tests at high speed using regenie
oneliners
Useful bash one-liners for bioinformatics.
PGSbuilder
PGSbuilder is an integrative tool for constructing polygenic score models
pQTLtools
pQTL tools
PRScs
Polygenic prediction via continuous shrinkage priors
sumFREGAT
:exclamation: This is a read-only mirror of the CRAN R package repository. sumFREGAT — Fast Region-Based Association Tests on Summary Statistics
taxonium
Explore very large trees in the browser
tislab.org
Public-facing website for tislab.org
VEP_plugins
Plugins for the Ensembl Variant Effect Predictor (VEP)