geneontology / biolink-api

API for linked biological knowledge

Home Page:http://api.geneontology.org/api/

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Gene Ontology API

The Gene Ontology API instance is accessible here:

https://api.geneontology.org/api/

Is is an implementation of both the BioLink Model and BioLink Implementation which rely on Ontobio

Running the server

After checking out this repo:

./start-server.sh

This uses gunicorn and starts a server on 8888 by default. pyvenv is activated automatically.

Then look at:

http://localhost:8888/api/

For the swagger docs

To run in development mode:

pyvenv venv
source venv/bin/activate
pip install -r requirements.txt
export PYTHONPATH=.:$PYTHONPATH
python biolink/app.py

About

API for linked biological knowledge

http://api.geneontology.org/api/


Languages

Language:Python 84.5%Language:Gherkin 13.4%Language:Perl 1.2%Language:Shell 0.3%Language:Makefile 0.3%Language:HTML 0.2%Language:CSS 0.0%