There are 0 repository under organoids topic.
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data
Deterministic evolution and stringent selection during pre-neoplasia
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Human brain organoids connected to silicon computers
Bacterial colonies attaching themselves to human brain organoids, as a neural link to a silicon computer
Preprocess, noise-reduction, threshold & quantify images to get box plots for each class (mainly cell cultures of different cel llines). Colocalization due to a naive trick of counting all overlapping signals/pixels. Could be done in ImageJ as well, but i thought this is better suited than fiddling with macros.
This repository provides StarDist and CellPose models, meticulously trained on a large dataset of Pancreatic Ductal Adenocarcinoma organoids co-cultured with immune cells. Pre-print available at https://www.biorxiv.org/content/10.1101/2024.02.12.580032v1. Demo application available at https://segmentorganoids.streamlit.app/
Electrophysiology analysis in ventral midbrain-striatal-cortical organoids (MISCOs) pre- and post- optogenetic stimulation.
Organoid Analyzing Tools (OAT) is a package that allow you to analyze organoids dynamics.
Involvement of Extracellular Vesicle-derived miRNA clusters in Developing Healthy and Rett Syndrome Brain Organoids
Nuclear segmentation and quantification of organoid slices