Integrative Biology and Predictive Analytics Group

KGLM

DeepPep

Deep proteome inference from peptide profiles

GNN

Gene Neural Network (GNN)

LOVE

Learning Ontologies Via Embeddings

KIDS

Knowledge Integration and Decision Support

IBPA-Collection-of-Reproducible-Code-and-Results

TIP-cli

Toxicology Integrated Platform

MOMA

Multi-Omics Modeling and Analytics

dairyML

Predict lactose content of various foods based on other nutritional information provided by ASA24 food recalls

FODMAPsAndGutMicrobiome

A meta-analysis studying the interplay of dietary FODMAPs, gut microbiome and health in irritable bowel syndrome (IBS).

FoodAtlas

MutationDB

Repository for the MutationDB paper

SemiAutomatedFoodKBC

Source code for "Semi-Automated Construction of Food Composition Knowledge Base." (Accepted by the 2nd AAAI AIAFS Workshop: https://arxiv.org/abs/2301.11322)

OMMs

Meal Design for Heterogeneous Glycan Content

OPEX

An optimal experimental design framework for accelerating knowledge discovery using gene expression data

SparseNN

SparseNN for torch7

A2H

AminoCompositionEstimator

AntibioticResistance

Cascade

ChemostatModel

Predict and understand the growth dynamics of E. coli in long-term chemostat.

ClusterMissForest

CowMetritis

dairy_matching

Match entries across food databases

OCB

Omics Compendium Builder

PAMDB

A Parts Database with Consensus Parameter Estimation for Synthetic Circuit Design

SBROME

Synthetic Biology Reusable Optimization Methodology

smoke_taint_prediction

Repository of smoke taint project

transformers

🤗Transformers: State-of-the-art Natural Language Processing for Pytorch, TensorFlow, and JAX.