salmonella
There are 0 repository under salmonella topic.
- Language:Python 21
apredeus / 10k_genomes
Various scripts for efficient processing of 10k Salmonella genomes
Language:Shell 12CFSAN-Biostatistics / bettercallsal
Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.
Language:Nextflow 7superphy / AMR_Predictor
Machine learning methods to predict the anti-microbial resistance of Salmonella.
Language:Python 3amrnet / amrnet
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
Language:JavaScript 2ImperialCollegeLondon / cgps-genotyphi
CGPS implementation of Genotyphi for assembled genomes.
Language:Java 2- Language:Jupyter Notebook 2
jimmyliu1326 / SamnSorter
Fast assortment of Salmonella genomes into stable clusters using phylogenetic placement and kNN classifier
Language:R 1- Language:Python 0
BehnsenLab / Siderophores
Xenosiderophores produced by gut commensal fungi or present in the diet promote Salmonella enterica serovar Typhimurium growth and gut colonization
Language:R 0- Illumina-pipeline-pathogenwatch
ChristopheVdE / Illumina-pipeline-pathogenwatch
Salmonella typhi; analysis pipeline for Illumina reads
Language:Python 0 next-gen pangenome graphs for predictive genomics
Language:Python 0pommevilla / pesica
Detection, extraction, and cluster assignment of S. Infantis pESI
Language:Python- Language:Python
