There are 1 repository under tmt-data-analysis topic.
R-based package for detecting differentially abundant proteins in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling
Simple workflows for the isobaric-labeling proteomic data from Proteome Discoverer with ANOVA, t-testing, DEqMS/limma and annotation via fgsea
Joint UMAP embedding and clustering of proteomic and transcriptomic data
Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
Compares PAW and MQ for a 7-channel TMT experiment; compares edgeR to two-sample t-test
Developing mouse lens done with MQ
Data from Plubell et al., 2017 processed with the PAW pipeline.
Comparison of SPS MS3 TMT data to MS2 TMT data
Public TMT data comparing MS2 to MS3 methods
R analysis of TMT data from Yeast triple knockout strains (Paulo et al., 2016, JASMS, v27, p1620-25)