mimic-iv

There are 5 repositories under mimic-iv topic.

• healthylaife / MIMIC-IV-Data-Pipeline

  A customizable pipeline for data extraction from MIMIC-IV.

  electronic-health-recordsmachine-learningreproducible-researchmimicmimic-iv
  Language:Jupyter Notebook 139

• VectorInstitute / cyclops

  Toolkit for evaluating and monitoring AI models in clinical settings

  clinical-datadrift-detectionmimic-ivomop-cdmclinical-decision-supporthealthcaremimic-iiiphysionetmodel-monitoringdata-driftmachine-learningdeep-learningevaluationeicu-crdclinical-researchelectronic-health-recordelectronic-medical-record
  Language:Python 67

• rvandewater / YAIB

  🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109

  deep-learningmachine-learningclinical-dataehreicu-crdhirid-datasetmimic-iiimimic-ivamsterdamumcdbclinical-mlbenchmarkframeworkicupatient-monitoringtime-series
  Language:Python 34

• LuChang-CS / MTGAN

  Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)

  gangenerative-adversarial-networkehrelectronic-health-recordsconditional-ganimbalanced-datatime-seriesmimic-iiimimic-iv
  Language:Python 24

• USM-CHU-FGuyon / BlendedICU

  OMOP standardization pipeline for ICU databases

  amsterdamumcdbeicuhirid-datasetmimic-iiimimic-ivomop
  Language:Python 23

• nicolaDeCristofaro / Predictive_Models_in_Healthcare

  Data Science & Machine Learning Project applied to Healthcare

  datasciencemachine-learninghealthcaremimic-ivknowledge-extraction
  Language:Jupyter Notebook 11

• aidotse / tabular-data-generation

  Predicting length of stay in hospitals intensive care unit using MIMIC IV

  mimic-ivctgantabular-datadlmlhealthcareehr
  Language:Jupyter Notebook 10

• itcr-uni-luebeck / mimic4fhir

  mimic4fhir converts data from MIMIC IV database (PostgreSQL) to HL7 FHIR R4 resources or the German Medical Informatics Initiative core data sets.

  fhirmimic-ivmedical-informatics-initiative
  Language:Java 10

• bptlab / mimic-log-extraction

  A CLI tool for extracting event logs out of MIMIC Databases.

  event-logmimic-ivprocess-mining
  Language:Python 8

• brentrichards / MIMIC-IV-Win

  For local installation of MIMIC IV on a Windows machine, on Postgresql 13 and using PGAdmin

  mimic-ivpostgreswindows-10
  8

• VectorInstitute / odyssey

  A toolkit for developing foundation models using Electronic Health Record (EHR) data.

  electronic-health-recordfoundation-modelshealthcaremachine-learningmimic-ivstate-space-modelstransformers
  Language:Python 8

• Jarvis-BITS / midodrine-mimic-iv

  Descriptive & prescriptive analysis of the effects of Vasoconstrictive medication via MIMIC's database using Targeted Maximum Likelihood Estimation for Causal Inference & ML techniques

  mimic-iv
  Language:Jupyter Notebook 6

• liuqidong07 / LEADER-pytorch

  [arXiv'24] The official implementation code of LEADER.

  healthcarelarge-language-modelsmimicmimic-iiimimic-ivrecommender-systemmedication-recommendation
  Language:Python 6

• christianwarmuth / treatment-based-patient-discharge-classification

  Patient Discharge Classification based on the Hospital Treatment Process (ICPM 2021)

  machinelearningprocessesmimic-iv
  Language:Jupyter Notebook 5

• kharrigian / ehr-stigma

  Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)

  biasclinical-nlpehrmedical-recordsmimic-ivpretrained-modelsstigma
  Language:Python 5

• AnnikaLarissa / MIMIC-IV

  Research Methodology Project

  federated-learningmachine-learningmimicmimic-ivfederated-forest
  Language:Jupyter Notebook 4

• BrahimFakri / Patient-Health-Data-Analysis-And-Feature-Extraction-For-Machine-Learning

  Embeddings generation from MIMIC-IV and MIMIC-CXR

  chest-xray-imagesembeddingsmodalitiesnotestabular-datatime-serieshaimmimicmimic-cxrmimic-ivphysionet
  Language:Jupyter Notebook 4

• PCM5 / Data-Toolbox

  Team Cyan's function toolbox for exploring databases

  analysiseicu-crdmimic-ivhealthcareclassification
  Language:Python 3

• amanchoudhri / liberation-timing-paper

  Code for paper using causal inference to explore the process of weaning ICU patients off of mechanical ventilation.

  causal-inferencemimic-ivpublished-papers
  Language:Jupyter Notebook 2

• doscsy12 / AKI_rrt

  SG Healthcare AI Datathon 2021 - acute kidney injury (AKI) patients requiring replacement renal therapy

  renaltherapyacute-kidney-failuredatathonai-in-healthcarerenal-replacement-therapymimic-ivdatabasemachine-learningpostgresql
  Language:Jupyter Notebook 2
• ckd_mimiciv

  fdiamant / ckd_mimiciv

  Towards a CKD (Chronic Kidney Disease) dataset.

  ckdjupytermimic-ivpostgresqlpython3
  Language:Jupyter Notebook 1

• vanderschaarlab / temporai-mivdp

  TemporAI-MIVDP: Adaptation of MIMIC-IV-Data-Pipeline for TemporAI

  data-pipelinesmimic-iv
  Language:Python 1

• isaacmg / mimic_iv_bq_queries

  Queries needed to recreate time series features for model training

  bigquerymimic-ivsql

• saaachis / data-transformation-MIMIC-IV-FHIR

  To transform the MIMIC-IV FHIR dataset into a structured format suitable for analysis by converting its JSON files containing patient, condition, and encounter data into a CSV file that maps patient IDs to condition timestamps. This involves extracting, processing, and merging data to create a comprehensive and analyzable dataset.

  artificial-intelligencecsv-filesdatadata-processingdata-sciencedata-transformationjson-filesmachine-learningmimic-ivstructured-data
  Language:Jupyter Notebook

• wu-yh / mimiciv-nutrition

  Extraction and analysis of data in the MIMIC IV database

  mimic-ivnutrition
  Language:R

• zavidnyi / multi-channel-transformer

  Implementation of the Transformer with Multi-channel attention mechanism and evalutation on the MIMIC-IV

  biometricmimic-ivtransformermultichannelpytorch
  Language:Python