mimic-iv

There are 5 repositories under mimic-iv topic.

healthylaife / MIMIC-IV-Data-Pipeline
A customizable pipeline for data extraction from MIMIC-IV.
electronic-health-records machine-learning mimic mimic-iv reproducible-research
Language:Jupyter Notebook 209
VectorInstitute / cyclops
A toolkit for evaluating and monitoring AI models in clinical settings
clinical-data clinical-decision-support clinical-research data-drift deep-learning drift-detection eicu-crd electronic-health-record electronic-medical-record evaluation healthcare machine-learning mimic-iii mimic-iv model-monitoring omop-cdm physionet
Language:Python 81
rvandewater / YAIB
🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
deep-learning machine-learning clinical-data ehr eicu-crd hirid-dataset mimic-iii mimic-iv amsterdamumcdb clinical-ml benchmark framework icu patient-monitoring time-series
Language:Python 64
USM-CHU-FGuyon / BlendedICU
OMOP standardization pipeline for ICU databases
amsterdamumcdb eicu hirid-dataset mimic-iii mimic-iv omop
Language:Python 39
LuChang-CS / MTGAN
Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)
gan generative-adversarial-network ehr electronic-health-records conditional-gan imbalanced-data time-series mimic-iii mimic-iv
Language:Python 35
VectorInstitute / odyssey
A toolkit for developing foundation models using Electronic Health Record (EHR) data.
electronic-health-record foundation-models healthcare machine-learning mimic-iv state-space-models transformers
Language:Python 31
liuqidong07 / LEADER-pytorch
[arXiv'24] The official implementation code of LEADER.
healthcare large-language-models mimic mimic-iii mimic-iv recommender-system medication-recommendation
Language:Python 28
starmpcc / REMed
REMed: Retrieval-Enhanced Medical prediction model
medical mlhc prediction remed retrieval amsterdamumcdb eicu hirid-dataset mimic-iv
Language:Python 17
aidotse / tabular-data-generation
Predicting length of stay in hospitals intensive care unit using MIMIC IV
ctgan dl ehr healthcare mimic-iv ml tabular-data
Language:Jupyter Notebook 13
nicolaDeCristofaro / Predictive_Models_in_Healthcare
Data Science & Machine Learning Project applied to Healthcare
datascience machine-learning healthcare mimic-iv knowledge-extraction
Language:Jupyter Notebook 13
brentrichards / MIMIC-IV-Win
For local installation of MIMIC IV on a Windows machine, on Postgresql 13 and using PGAdmin
mimic-iv postgres windows-10
12
skfit-uni-luebeck / mimic4fhir
mimic4fhir converts data from MIMIC IV database (PostgreSQL) to HL7 FHIR R4 resources or the German Medical Informatics Initiative core data sets.
fhir mimic-iv medical-informatics-initiative
Language:Java 10
bptlab / mimic-log-extraction
A CLI tool for extracting event logs out of MIMIC Databases.
event-log mimic-iv process-mining
Language:Python 9
Jarvis-BITS / midodrine-mimic-iv
Descriptive & prescriptive analysis of the effects of Vasoconstrictive medication via MIMIC's database using Targeted Maximum Likelihood Estimation for Causal Inference & ML techniques
mimic-iv
Language:Jupyter Notebook 8
mimic-ai
abhishek-ch / mimic-ai
MIMICAI - Exploring MIMIC Data Using LLM and Open-WebUI
dataengineering datascience llm machine-learning mimic-iv
Language:Python 7
kharrigian / ehr-stigma
Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)
bias clinical-nlp ehr medical-records mimic-iv pretrained-models stigma
Language:Python 6
AnnikaLarissa / MIMIC-IV
Research Methodology Project
federated-learning machine-learning mimic mimic-iv federated-forest
Language:Jupyter Notebook 5
BrahimFakri / Patient-Health-Data-Analysis-And-Feature-Extraction-For-Machine-Learning
Embeddings generation from MIMIC-IV and MIMIC-CXR
chest-xray-images embeddings modalities notes tabular-data time-series haim mimic mimic-cxr mimic-iv physionet
Language:Jupyter Notebook 5
christianwarmuth / treatment-based-patient-discharge-classification
Patient Discharge Classification based on the Hospital Treatment Process (ICPM 2021)
machinelearning processes mimic-iv
Language:Jupyter Notebook 5
doscsy12 / AKI_rrt
SG Healthcare AI Datathon 2021 - acute kidney injury (AKI) patients requiring replacement renal therapy
renal therapy acute-kidney-failure datathon ai-in-healthcare renal-replacement-therapy mimic-iv database machine-learning postgresql
Language:Jupyter Notebook 4
soni-sarvesh / archehr-qa
mimic mimic-iii mimic-iv
4
PCM5 / Data-Toolbox
Team Cyan's function toolbox for exploring databases
analysis eicu-crd mimic-iv healthcare classification
Language:Python 3
AIDx-Med / AIDx-Model-Development
AIDx Model Development: Developing AI-driven models for healthcare applications.
deep-learning healthcare language-models machine-learning medicine mimic-iv mixtral-8x7b-instruct natural-language-processing nlp python pytorch transformer
Language:Jupyter Notebook 2
amanchoudhri / liberation-timing-paper
Code for paper using causal inference to explore the process of weaning ICU patients off of mechanical ventilation.
causal-inference mimic-iv published-papers
Language:Jupyter Notebook 2
ckd_mimiciv
fdiamant / ckd_mimiciv
Towards a CKD (Chronic Kidney Disease) dataset.
ckd jupyter mimic-iv postgresql python3
Language:Jupyter Notebook 2
holynomad / korea-clinical-datathon-2024
EHR data engineering using MIMIC-IV and K-MIMIC
data-engineering datathon ehr-data mimic-iv python3 k-mimic
Language:Python 1
rudolfjs / PostgresMimicImporter
MIMIC data importer for PostgreSQL
mimic mimic-iv mimic-iv-ed postgres postgresql python3
Language:Python 1
starmpcc / ehr_postgres
Docker container building scripts for MIMIC-IV, MIMIC-III, and eICU.
container docker ehr eicu eicu-crd mimic-iii mimic-iv mimic-iv-ed postgres
Language:Python 1
vanderschaarlab / temporai-mivdp
TemporAI-MIVDP: Adaptation of MIMIC-IV-Data-Pipeline for TemporAI
data-pipelines mimic-iv
Language:Python 1
zavidnyi / multi-channel-transformer
Implementation of the Transformer with Multi-channel attention mechanism and evalutation on the MIMIC-IV
biometric mimic-iv transformer multichannel pytorch
Language:Python 1
mariakamran86 / MIMIC_Modeling_Discrete_Indicators_R
Intended to implement multiple-indicator, multiple-cause (MIMIC) modelling with discrete indicators in R.
maximum-likelihood-estimation mimic-iv probit-analysis bootstrap mimic residual-analysis seemingly-unrelated-regression structural-estimation
Language:R 0
saaachis / data-transformation-MIMIC-IV-FHIR
To transform the MIMIC-IV FHIR dataset into a structured format suitable for analysis by converting its JSON files containing patient, condition, and encounter data into a CSV file that maps patient IDs to condition timestamps. This involves extracting, processing, and merging data to create a comprehensive and analyzable dataset.
artificial-intelligence csv-files data data-processing data-science data-transformation json-files machine-learning mimic-iv structured-data
Language:Jupyter Notebook 0
isaacmg / mimic_iv_bq_queries
Queries needed to recreate time series features for model training
bigquery mimic-iv sql
philipdarke / mimic4
Add the MIMIC-IV data to a DuckDB database
duckdb mimic-iv
Language:Python
shibbir-ahmad24 / MS-Final-Project-on-LLM-RAG-Powered-Medical-Chatbot
Developing an LLM-RAG Powered Medical Chatbot for Clinical Question Answering
chatbot clinical-nlp llm mimic-iv rag web-application
zhenkewu / synthEHRella
SynthEHRella is a benchmarking package used for evaluating synthetic Electronic Health Records (EHR) data generation methods.
benchmarking ehr-data mimic-iii mimic-iv synthetic-dataset-generation
Language:Python

mimic-iv

healthylaife / MIMIC-IV-Data-Pipeline

VectorInstitute / cyclops

rvandewater / YAIB

USM-CHU-FGuyon / BlendedICU

LuChang-CS / MTGAN

VectorInstitute / odyssey

liuqidong07 / LEADER-pytorch

starmpcc / REMed

aidotse / tabular-data-generation

nicolaDeCristofaro / Predictive_Models_in_Healthcare

brentrichards / MIMIC-IV-Win

skfit-uni-luebeck / mimic4fhir

bptlab / mimic-log-extraction

Jarvis-BITS / midodrine-mimic-iv

abhishek-ch / mimic-ai

kharrigian / ehr-stigma

AnnikaLarissa / MIMIC-IV

BrahimFakri / Patient-Health-Data-Analysis-And-Feature-Extraction-For-Machine-Learning

christianwarmuth / treatment-based-patient-discharge-classification

doscsy12 / AKI_rrt

soni-sarvesh / archehr-qa

PCM5 / Data-Toolbox

AIDx-Med / AIDx-Model-Development

amanchoudhri / liberation-timing-paper

fdiamant / ckd_mimiciv

holynomad / korea-clinical-datathon-2024

rudolfjs / PostgresMimicImporter

starmpcc / ehr_postgres

vanderschaarlab / temporai-mivdp

zavidnyi / multi-channel-transformer

mariakamran86 / MIMIC_Modeling_Discrete_Indicators_R

saaachis / data-transformation-MIMIC-IV-FHIR

isaacmg / mimic_iv_bq_queries

philipdarke / mimic4

shibbir-ahmad24 / MS-Final-Project-on-LLM-RAG-Powered-Medical-Chatbot

zhenkewu / synthEHRella