KUMC Division of Medical Informatics's repositories
naaccr-tumor-data
using NAACCR tumor registry data in i2b2, PCORNet CDM
i2p-transform
i2b2 to PCORnet Common Data Model Transformation - requires i2b2 PCORnet ontology
REDCap-ResidentEvaluations
Export data out of REDCap using python API and runs monthly jobs
h2p-mapping
Mapping the HERON i2b2 Ontology to the i2b2 PCORNet CDM Onotolgy for use with the i2p-transform
REDCap-ADCEnglishSpanish
REDCap export for ADC. Combines English and Spanish versions into one export.
Backbone
Provides backbone infrastructure elements for OHNLP toolsets.
Check_cert
Codes for chcking all the ssl certificates and POSTGRES certs are stable for the next 30 days
covid19i2b2
Instructions and database scripts for extracting COVID-19 related data from i2b2
data-sharing-example
This is a sample project
i2b2-webclient
Source code for the i2b2 Web Client
imagemap
Imagemap REDCap external module
leaf
Leaf Clinical Data Explorer
Phase2.1AKIRPackage
R Package to run statistical analyses for COVID-19 patients with acute kidney injury.
Phase2.1SqlDataExtraction
SQL code to generate Phase 2.1 CSV files
PhaseX.2SqlDataExtraction
SQL and documentation to extract 4CE Phase 1.2 and 2.2 data files.
Phenotype_Data_Acquisition
The repository for code and documentation produced by the N3C Phenotype and Data Acquisition workstream
PKD-Import-and-Mapping
This project imports data from Maryland University and children's national; makes changes as per requirements and then maps the data to KUMC redcap PKD project
pps-client
A basic client for retrieving and updating Pleasant Password Server credentials
shrine-docker-image
An unopinionated docker image for SHRINE