mimic-iii

There are 22 repositories under mimic-iii topic.

MIT-LCP / mimic-code
MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases
critical-care icu mimic-iii physionet
Language:Jupyter Notebook 2976
ncbi-nlp / BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
natural-language-processing bionlp fasttext sent2vec sentence-embeddings word-embeddings sentence-similarity pubmed mimic-iii
Language:Jupyter Notebook 597
ncbi-nlp / bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
bert bert-model natural-language-processing pubmed pubmed-abstracts language-model mimic-iii
Language:Python 578
MIT-LCP / mimic-omop
Mapping the MIMIC-III database to the OMOP schema
omop data-model mimic-iii
Language:PLpgSQL 132
MIT-LCP / mimic-website
Website for the MIMIC Critical Care Database (currently version MIMIC-III)
ehr icu mimic mimic-iii physionet
Language:CSS 114
MIT-LCP / mimic-workshop
Introduction to MIMIC-III, the Critical Care Database
mimic-iii physionet
Language:Jupyter Notebook 86
VectorInstitute / cyclops
A toolkit for evaluating and monitoring AI models in clinical settings
clinical-data clinical-decision-support clinical-research data-drift deep-learning drift-detection eicu-crd electronic-health-record electronic-medical-record evaluation healthcare machine-learning mimic-iii mimic-iv model-monitoring omop-cdm physionet
Language:Python 82
ycq091044 / SafeDrug
IJCAI2021: Code for SafeDrug, MIMIC data processing, Medical code mapping
drug-molecules drug-recommendation graph-neural-networks mimic-iii
Language:Python 82
MIT-LCP / mimic-iii-paper
Repository for the paper describing MIMIC-III
mimic-iii physionet icu
Language:Jupyter Notebook 78
rvandewater / YAIB
🧪Yet Another ICU Benchmark: a holistic framework for the standardization of clinical prediction model experiments. Provide custom datasets, cohorts, prediction tasks, endpoints, preprocessing, and models. Paper: https://arxiv.org/abs/2306.05109
amsterdamumcdb benchmark clinical-data clinical-ml deep-learning ehr eicu-crd framework hirid-dataset icu machine-learning mimic-iii mimic-iv patient-monitoring time-series
Language:Python 66
nus-mornin-lab / echo-mimiciii
Transthoracic echocardiography and mortality in sepsis: analysis of the MIMIC-III database
echocardiography icu mimic-iii sepsis
Language:Jupyter Notebook 52
USM-CHU-FGuyon / BlendedICU
OMOP standardization pipeline for ICU databases
amsterdamumcdb eicu hirid-dataset mimic-iii mimic-iv omop
Language:Python 40
LuChang-CS / MTGAN
Code for the paper: Multi-Label Clinical Time-Series Generation via Conditional GAN (IEEE TKDE)
gan generative-adversarial-network ehr electronic-health-records conditional-gan imbalanced-data time-series mimic-iii mimic-iv
Language:Python 36
MIT-LCP / bloatectomy
A python package for removing duplicate text in clinical notes or other documents
fda mimic mimic-iii nlp-resources plagarism plagiarism-evaluation python-3 python3 text-analysis text-mining text-processing
Language:TeX 36
anantzoid / Medical-Diagnosis-Learning
Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model
deep-learning rnn pytorch attention-mechanism mimic-iii healthcare clinical-notes
Language:Jupyter Notebook 34
Yuqi92 / deep-patient-representation-mimiciii-multitask
Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
clinical-notes convolutional-neural-networks deep-learning mimic-iii mortality-prediction multi-task-prediction
Language:Python 32
liuqidong07 / LEADER-pytorch
[arXiv'24] The official implementation code of LEADER.
healthcare large-language-models medication-recommendation mimic mimic-iii mimic-iv recommender-system
Language:Python 30
acadTags / Rare-disease-identification
Rare disease identification from free-text clinical notes with ontologies and weak supervision
ontology ordo weak-supervision rare-disease clinical-notes mimic-iii discharge-summaries umls entity-linking ontology-matching
Language:Python 28
SpiroGanas / MIMIC3py
A Python library to load and analyze the MIMIC III Critical Care Database
mimic-iii python
Language:Python 28
apakbin / ICU72hReadmissionMIMICIII
Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database
icu-readmission-prediction mimic-iii python3 r sql
Language:Python 27
nus-mornin-lab / oxygenation_kc
Repo for Oxygenation project proposed by KC at Datathon
mimic-iii
Language:HTML 24
amin-nejad / mimic-text-generation
Master's project
mimic-iii python nlp nlp-machine-learning text-generation
Language:Jupyter Notebook 19
jacobdeasy / flexible-ehr
Time-Sensitive Deep Learning for ICU Outcome Prediction Without Variable Selection or Cleaning.
deep-learning recurrent-neural-networks embeddings mortality-prediction classification reproducible-research pytorch mimic-iii lstm supervised-learning layer-normalization
Language:Python 19
akiani / gym-sepsis
Open AI Gym Environment For MIMIC Dataset Sepsis Patient
reinforcement-learning machine-learning healthcare mimic-iii ai
Language:Python 18
linzhenyuyuchen / kddMIMIC
Pipeline of Data Extraction, Preprocessing, Representation, and Training for MIMIC-III
ehr-data mimic mimic-iii
Language:Python 17
dmitrykazhdan / MEME-RNN-XAI
MEME: Generating RNN Model Explanations via Model Extraction
rnn xai recurrent-neural-networks concept-explanation model-extraction model-explanation interpretability concept-extraction mimic-iii time-series explainable-ai
Language:Jupyter Notebook 15
ycq091044 / MICRON
Code of MICRON, MIMIC data processing, Residual Learning
drug-recommendation iqvia mimic-iii residual-learning
Language:Python 15
acampillos / sepsis-prediction
Early prediction of sepsis with gradient boosting (XGBoost) and deep learning (LSTM and GRU) using MIMIC-III data.
lstm clinical-data gru mimic-iii sepsis xgboost time-series-classification
Language:Jupyter Notebook 14
AGARNER18 / Respiratory-Mortality
Predict respiratory patient mortality in ICU units using the MIMIC III database
mimic-iii r sql stacked-ensembles xgboost random-forest ranger support-vector-machines rpart neural-network decision-trees postgresql
Language:R 13
j-crowe / ICU_Survival_ML_Model_Comparison
MIMICIII Sepsis Survival Analysis
mimic-iii proposal udacity machine-learning
Language:Jupyter Notebook 13
Raymvp / HACSurv
HACSurv: A Hierarchical Copula-based Approach for Survival Analysis with Dependent Competing Risks
competing-risks copula ehr-data framingham machine-learning mimic-iii seer survival-analysis
Language:Jupyter Notebook 11
MIT-LCP / bhi-bsn-challenge
Repository for the IEEE BHI-BSN MIMIC-III Challenge
mimic-iii challenge critical-care
Language:HTML 10
UHBristolDataScience / towards-decision-support-icu-discharge
Public code from paper: 'Towards a decision support tool for intensive care discharge: machine learning algorithm development using electronic healthcare data from MIMIC-III and Bristol, UK'
intensive-care mimic-iii
Language:Jupyter Notebook 10
NeelKanwal / Attention-based-clinical-note-summarization
A new approach to extract clinical summaries from discharge notes
attention-mechanism clinical-notes extractive-summarization language-models mimic-iii summarization
Language:Jupyter Notebook 9
banderlog / MIMICIII-to-FHIR
Repository to transform the MIMIC-III dataset into a flat hierarchy FHIR format
fhir mimic mimic-iii
Language:Jupyter Notebook 8
Dipeshtamboli / PosNegDM-Reinforced-Sequential-Decision-Making-for-Sepsis-Treatment
Official code for "Reinforced Sequential Decision-Making for Sepsis Treatment: The POSNEGDM Framework with Mortality Classifier and Transformer" published at JBHI.
mimic-iii
Language:Python 8

mimic-iii

MIT-LCP / mimic-code

ncbi-nlp / BioSentVec

ncbi-nlp / bluebert

MIT-LCP / mimic-omop

MIT-LCP / mimic-website

MIT-LCP / mimic-workshop

VectorInstitute / cyclops

ycq091044 / SafeDrug

MIT-LCP / mimic-iii-paper

rvandewater / YAIB

nus-mornin-lab / echo-mimiciii

USM-CHU-FGuyon / BlendedICU

LuChang-CS / MTGAN

MIT-LCP / bloatectomy

anantzoid / Medical-Diagnosis-Learning

Yuqi92 / deep-patient-representation-mimiciii-multitask

liuqidong07 / LEADER-pytorch

acadTags / Rare-disease-identification

SpiroGanas / MIMIC3py

apakbin / ICU72hReadmissionMIMICIII

nus-mornin-lab / oxygenation_kc

amin-nejad / mimic-text-generation

jacobdeasy / flexible-ehr

akiani / gym-sepsis

linzhenyuyuchen / kddMIMIC

dmitrykazhdan / MEME-RNN-XAI

ycq091044 / MICRON

acampillos / sepsis-prediction

AGARNER18 / Respiratory-Mortality

j-crowe / ICU_Survival_ML_Model_Comparison

Raymvp / HACSurv

MIT-LCP / bhi-bsn-challenge

UHBristolDataScience / towards-decision-support-icu-discharge

NeelKanwal / Attention-based-clinical-note-summarization

banderlog / MIMICIII-to-FHIR

Dipeshtamboli / PosNegDM-Reinforced-Sequential-Decision-Making-for-Sepsis-Treatment