Carl Mathias Kobel's repositories
Bio326-NMBU-2023
BIO326 Genome sequencing; tools and analysis 2023
DRAM-turnkey
Distilled and Refined Annotation of Metabolism: Turnkey edition with trivial installation. Just provide the data and turn the key.
mspipeline1
🪆🦖 A snakemake wrapper around Nesvilab's FragPipe-CLI. In a perfect world, this pipeline was based on Sage.
snakemake_template
A template to start out a snakemake project with
tabseq
🎈📚 A tabular sequence format with 4 columns - Or a way to work with fasta-sequences using the R-tidyverse
bioconda-recipes
Conda recipes for the bioconda channel.
cm2_benchmark
🏋️🧑⚖️ To test the performance and to compare to other tools.
comparem2-ci
Test battery for CompareM2.
conda_definitions
independent repo for use as submodule in repo snakemake_template
dram_wrapper
WYSIWYW
FragPipe
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
gapseq
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
Kobelomics
Kobelomics - Customized bioinformatic pipelines for microbial multi-omics
kofam_scan
CLI tool to annotate genes with KOfam
MS_pipeline2
🦖✌️Trying again...
org-html-themes
Transform your Org mode files into stunning HTML documents in minutes with our Org mode HTML theme. Elevate your productivity and impress your readers! #orgmode #html #theme #productivity #design
profiles
profiles for use as independent submodule in repository snakemake_template
singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
slurm-utils
A few utilities for use on a SLURM cluster. Added some qnd logging.
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks