clinical-notes
There are 11 repositories under clinical-notes topic.
jamesmullenbach / caml-mimic
multilabel classification of EHR notes
Language:Python 262ncbi-nlp / NegBio
:newspaper: High-performance tool for negation and uncertainty detection in radiology reports
Language:Python 1543778 / icd-prediction-mimic
Predicting ICD Codes from Clinical Notes
Language:Jupyter Notebook 54abachaa / MEDIQA-Chat-2023
MEDIQA-Chat Shared Tasks @ ACL-ClinicalNLP 2023
Language:Python 43A new collection of 1.7k doctor-patient conversations and corresponding clinical notes/summaries.
yao8839836 / tcm_bert
BERT for TCM clinical records classification. JAMIA 2019
Language:Python 38anantzoid / Medical-Diagnosis-Learning
Learning from Discharge Summaries to extract mentioned diagnoses using Hierarchical Attention Model
Language:Jupyter Notebook 33Yuqi92 / deep-patient-representation-mimiciii-multitask
Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
Language:Python 30ieeta-pt / DrAC
Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
Language:Python 27kavgan / clinical-concepts
Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.
acadTags / Rare-disease-identification
Rare disease identification from free-text clinical notes with ontologies and weak supervision
Language:Python 24weimin17 / Multimodal_Transformer
A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction
Language:Python 24NLPReViz / emr-vis-web
An Interactive Tool for Natural Language Processing on Clinical Text
Language:JavaScript 22frankkramer-lab / GERNERMED
GERNERMED is the first open neural NER model for medical entities designed for German data.
Language:Python 17GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.
Language:Python 15An Interactive Tool for Natural Language Processing on Clinical Text
Language:Java 149th-digit-contracting-limited / Personal-health-token
An AI, Machine Learning and Blockchain based healthcare ecosystem that predicts health outcome, divulges users' and environmental health risk; mitigates illicit drug use.
nlp-pucrs / cci-regression
Charlson Comorbidity Index Regression using Clinical Notes
Language:Jupyter Notebook 10NeelKanwal / Attention-based-clinical-note-summarization
A new approach to extract clinical summaries from discharge notes
Language:Jupyter Notebook 8ad1m / Dr-ANN
A web based system that uses deep learning to diagnosis patients based on their clinical notes
Language:Jupyter Notebook 7GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.
Language:Python 7lindvalllab / MLSym
Deep learning for cancer symptoms monitoring on the basis of EHR unstructured clinical notes
Language:Python 7AIMedLab / TransICD
Code and Datasets for the paper "TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding", accepted by AIME 2021.
Language:Python 5nlpsandbox / data-node
Repository of FHIR and annotation resources used to benchmark NLP Sandbox tools
Language:Python 4- Language:Python 3
jacobjinkelly / clinical-ad
Abbreviation disambiguation (AD) in clinical notes using concept embedding model (Marta Skreta) and convolutional neural network baseline (Jacob Kelly).
Language:Jupyter Notebook 3semantic-health / deep-patient-cohorts
A tool for automatically labelling discharge summaries into disease categories.
Language:Python 3- Language:Go 3
The deployment of Artificial Intelligence for the understanding of common text-based tasks in the healthcare sector is key to extraordinary advancement. Electronic Health Records (EHR) are stored in the health care system in an unstructured and categorically distributed way. We have a ICD-9 Labeled data which is being used to find attention on clinical notes based on predicted codes for clinical text.
Language:Python 2codeverlan / Clinical_Transcriber
Uses Whisper AI to transcribe and process audio files, with the output being useful to psychotherapists.
Language:Python 1crherlihy / clinical_nli_artifacts
MedNLI Is Not Immune: Natural Language Inference Artifacts in the Clinical Domain (ACL-IJCNLP '21)
Language:Python 1Moshkante / myNLP2HPO_GenDis_pipeline
Research Practical and Master Thesis topic for the University of Luxembourg. Natural language processing pipeline to extract HPO terms from clinical notes or EHR, annotate genes and diseases to the extracted terms and prioritize them by their frequency.
Language:Python 1ravishchawla / doctorann
A web based system that uses deep learning to diagnosis patients based on their clinical notes.
Language:Jupyter Notebook 1vanboefer / fall_regex_nl
Vocabulary-based detection of fall events in Dutch clinical notes.
Language:Python 1- Language:Dart 0
zimolzak / datathon-2022
The association of demographic factors with negative descriptors in medical text
Language:R
