omop-cdm
There are 2 repositories under omop-cdm topic.
callahantiff / OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
Language:Jupyter Notebook 80VectorInstitute / cyclops
Toolkit for evaluating and monitoring AI models in clinical settings
Language:Python 68- Language:TypeScript 37
databricks-industry-solutions / omop-cdm
Unlocking the Power of Health Data With a Modern Data Lakehouse
Language:Python 17- omopfhirmapLanguage:Java 12
Health-Informatics-UoN / Carrot-Mapper
Carrot: Convenient And Reusable Rapid Omop Transformer.
Language:Python 12CNAG-Biomedical-Informatics / convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
Language:Perl 9- Rabbit-in-a-Blender
RADar-AZDelta / Rabbit-in-a-Blender
An ETL pipeline to transform your EMP data to OMOP.
Language:Python 9 meerapatelmd / chariot
R Package that supports standardization of clinical data to Athena (athena.ohdsi.org)
Language:R 6- Language:Java 6
answerdigital / oxford-omop-data-mapper
A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
Language:C# 5fabkury / phea
R package for finding patients in SQL databases using formulas and without using SQL joins
Language:R 5The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data
Language:FreeMarker 4- hutchLanguage:C# 4
Create a simulation patient population using Synthea and ETL it into the OMOP Common Data Model
Language:R 3miracum / recruit
A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR and the OMOP CDM
Language:Java 3BIH-MI / ohdsi-compliance
A set of document templates facilitating efficient implementation and operation of an OMOP/OHDSI installation
elifdy / omop2survey
The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis
Language:Python 2pedro-cmat / v6-summary-omop-py
Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6
Language:Python 2ngiangre / ROMOPOmics
R package to parse datasets into SQLite-friendly tables
Language:R 1- Language:Jinja 1
- Language:Python 1
BorisDelange / LinkR
A web app for visualization and analysis of healthcare data using OMOP CDM.
Language:R 0Public content available for LinkR
Language:R 0jaygee-on-github / The-APHRC-LSHTM-MUBAS-IDSR-Project
During the pandemic countries in the African region used data systems they built on top of the WHO Integrated Disease Surveillance and Response (IDSR) framework to track COVID-19 and formulate public health responses. Our IDSR project wrangles these data systems into instances of a common data model and conducts network research on top of them.
0qmarcou / computer_assisted_ICD_coding_paper
Companion code repository to Marcou et al. 2024, Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy
Language:Jupyter Notebook 0Custom Airflow operators and hooks, that help to upload our raw hospital data to Google Cloud.
Language:Python 0- Language:Shell
edencehealth / ohdsi-glue
tool to facilitate the setup and ongoing maintenance of OHDSI & EHDEN tool deployments
Language:PythonSQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM
Language:PythonA tool for backing up OHDSI WebAPI cohorts in a git repository
Language:Python- Language:Python
