lpryszcz

bin

My bioinfo toolbox

pyScaf

Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

REDiscover

RNA editing discovery from NGS data.

rapsi

Rapid similarity search for proteins

HiCembler

Assembler for HiC data

abstracts

Create the Book of Abstracts from responses in spreadsheet (.xlsx) / google forms

badges

Repository to create badges for the attendees of conference/workshop

bioconda-recipes

Conda recipes for the bioconda channel.

bonito

Convolution Basecaller for Oxford Nanopore Reads

Chiron

A basecaller for Oxford Nanopore Technologies' sequencers

deeplexicon

Signal based nanopore RNA demultiplexing with convolutional neural networks

dorado

A LibTorch Basecaller for Oxford Nanopore Reads

eif

Extended Isolation Forest for Anomaly Detection

emacs-for-python

Collection of emacs extensions specifically collected for python development, with workflow guidelines!

go

Playground for golang

jetson_nanopore_sequencing

A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

latex-moderncv

My latex resume using the moderncv template

lpryszcz

masurca

megSAP

a Medical Genetics Sequence Analysis Pipeline

monty_hall

simple implementation demonstrating Monty Hall

nanoRMS

Prediction of RNA modification stoichiometry from per-read current intensity information using KNN and KMEANS algorithms

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

OpenDBA

GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

pyguppyclient

Python client library for Guppy

pytorch-tutorial

PyTorch Tutorial for Deep Learning Researchers

singularity-userdocs

User Documentation

sphinx

taiyaki

Training models for basecalling Oxford Nanopore reads

tombo

Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.