karyotype

There are 2 repositories under karyotype topic.

• eweitz / ideogram

  Chromosome visualization for the web

  visualizationgenomicscytogeneticskaryotypecancer-genomicscomparative-genomicspersonal-genomics
  Language:JavaScript 288

• sanjaynagi / rna-seq-pop

  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data

  snakemake-workflowrna-seqvariant-callingdifferential-expressionpopulation-genomicssnakemaketranscriptomicsworkflowpopulation-geneticsselectionkaryotypeancestrygenomic-surveillance
  Language:Jupyter Notebook 18

• caravagnalab / CNAqc

  CNAqc - Copy Number Alteration (CNA) Quality Check package

  copy-number-variationquality-checkgenomicskaryotypepeak-detection
  Language:R 17

• lukasuz / Banding-Pattern-Extraction

  Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.

  image-processingchromosomeschromosome-abberationsmedical-image-processingchromosomebanding-patternscytogeneticsgenomicskaryotypegenetics
  Language:Python 14

• marccasian / KaryML-Framework

  Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down syndrome, Klinefelter syndrome or Hemophilia. Usually, clinicians are doing chromosome analysis using the karyotype to detect such disorders. The main contribution of the current article consists of introducing a new approach called KaryML Framework, which is extending our previous research: KarySOM: An Unsupervised Learning based Approach for Human Karyotyping using Self-Organizing Maps . Our major goal is to provide a new method for an automated karyotyping system using unsupervised techniques. Additionally, we provide computational methods for chromosome feature extraction and to develop an intelligent system designed to aid clinicians during the karyotyping process.

  unsupervised-learningkaryotypechromosomesself-organizing-mapfuzzy-self-organizing-mapchromosomal-disorder
  Language:Python 14

• SouthGreenPlatform / GeMo

  A mosaic genome painting tool for plant genomes

  bioinformaticsbioinformatics-scriptsgenomeskaryotypeplantsvisualizationweb
  Language:JavaScript 13

• andreasprlic / karyotypeSVG

  A javascript library to generate SVG based ideograms of chromosomes showing cytogenetic bands

  chromosomeideogramjavascriptkaryotypesvg
  Language:JavaScript 6

• i2-wustl / CytoGPS

  CytoGenetic Pattern Sleuth (CytoGPS) is a software tool to parse semi-structured ISCN-based karyotypes in text formats. This Java-based software was developed using ANTLR (ANother Tool for Language Recognition).

  karyotypeiscn
  Language:Java 3

• ggirelli / ggkaryo2

  ggplot2-based karyotype plotting R package

  ideogramkaryotypeplotggplot2
  Language:R 1

• PingjunChen / ChromosomeSeg

  Overlapped chromosome segmentation

  chromosomekaryotypeoverlappingsegmentation
  Language:Python 1

• jviz-deprecated / biojviz-ideogram

  Biojviz ideogram element

  ideogramchromosomeregionkaryotypebiojvizbiojviz-components
  Language:HTML 0

• jviz-deprecated / biojviz-karyoviewer

  Biojviz karyotype viewer element

  karyotypebioinformaticsvisualizationbiojvizbiojviz-components
  Language:HTML