in-silico

There are 0 repository under in-silico topic.

geem-lab / overreact
⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data. Crafted at the @geem-lab.
computational-chemistry computational-chemistry-logfiles automation cli dsl chemical-kinetics reactions in-silico thermochemistry qrrho rrho quantum-tunneling first-principles microkinetics python library modeling overreact
Language:Python 51
gear-genomics / dicey
In-silico PCR, primer design and padlock design for in-situ sequencing
gear-genomics pcr primer primer-design in-silico sanger-sequencing amplicon amplicon-sequencing padlock in-situ-sequencing
Language:C++ 49
PyPEF
Protein-Engineering-Framework / PyPEF
PyPEF – Pythonic Protein Engineering Framework
in-silico machine-learning protein-engineering protein-fitness-prediction protein-sequences python3 regression
Language:Python 22
carboncopies / BrainGenix-NES
[Mirror of https://gitlab.braingenix.org/carboncopies/] BrainGenix-NES is a cutting-edge simulation platform for whole brain emulation research and development that supports digitally replicating both form and function of brain tissue. Developed by the Carboncopies Foundation's BrainGenix initiative, it complements the Virtual Brain Platform (VBP).
neuron whole-brain-emulation carboncopies-foundation in-silico neuroscience science-research brain-emulation-challenge virtual-brain-platform braingenix
Language:C++ 14
ArsoVukicevic / OpenMandible
OpenMandible: An open-source framework for highly realistic numerical modelling of lower mandible physiology
dentistry fef fea in-silico simulation teeth mandible modeling
Language:C++ 13
PyPEF
niklases / PyPEF
PyPEF – Pythonic Protein Engineering Framework
machine-learning protein-sequences protein-fitness-prediction protein-engineering in-silico python3 regression
Language:Python 13
gear-genomics / silica
In-silico PCR amplification on complete genomes
gear-genomics pcr in-silico primer-design primer sanger-sequencing amplicon
Language:JavaScript 9
geem-lab / overreact-guide
⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data
python cli automation library dsl first-principles computational-chemistry reactions chemical-kinetics thermochemistry microkinetics in-silico quantum-tunneling rrho computational-chemistry-logfiles qrrho guide website modeling overreact
Language:Jupyter Notebook 8
arnaudporet / kali
In silico therapeutic target discovery using network attractors: avoiding pathological phenotypes
therapeutic-targets in-silico biological-networks boolean-networks regulatory-networks drug-discovery computational-biology biological-simulation biological-modeling
Language:Go 5
tseemann / injecta
Insert genes into genomes to aid synthetic test data generation
bacterial-genomes synthetic-data genetics test-data-generator bioinformatics in-silico
Language:Perl 5
benjamindkilleen / SPIE-2022_cortical-breach-anticipation
Code for our paper at SPIE Medical Imaging 2022: "Toward Perception-based Anticipation of Cortical Breach During K-wire Fixation of the Pelvis"
image-guided-interventions deep-learning simulation in-silico pelvis-fracture
Language:Python 4
abhijeetsingh1704 / REDigest
REDigest: a Python GUI for In-Silico Restriction Digestion Analysis for Gene or Complete Genome Sequences
restriction-enzyme restriction restriction-digestion genes genome multifasta complete-genomes in-silico in-silico-restriction
Language:Python 2
CardiacModelling / hERG-binding-mechanisms
Source code and data for reproducing "The impact of uncertainty in hERG binding mechanism on in silico predictions of drug-induced proarrhythmic risk".
drug-binding drug-induced-arrhythmias herg in-silico uncertainty
Language:Python 2
forstertim / insidapy
In-silico data generation package. Easy and consistent generation of example data for chemical/biochemical reaction case studies.
in-silico modeling simulation
Language:Python 2
AhmedElsherbini / HTS_insilico_PCR
High throughput In-silico PCR
hts pcr high-troughput-pcr in-silico in-silico-pcr
Language:Perl 1
BlueBrain / functionalizer
Create a functional connectome from physical connections between cells
connectome-generation in-silico neuroscience
Language:Python 1
git-abra / Neuzy
Neuzy - Population-based Neuron Modelling
computational-neuroscience neuron in-silico neuroscience
Language:Python 1
moorugi98 / Hodgkin-Huxley_network
Model 3 HH neurons connected in different motifs and different axonal delays. Compute synchronization between spikes and information flow between them.
hodgkin-huxley-model in-silico information-theory neuroscience synchronization
Language:Jupyter Notebook 1
DrPaulValle / Bioestadistica-para-el-ajuste-de-datos-experimentales
Estimación de tasas de liberación de fármaco en hidrogeles
biostatistics in-silico nonlinear-regression pharmacokinetics drug-release
0
ecairrao / Molecular-Docking-of-Metformin
In silico simulation between metfomin and oestrogen receptors (ERalpha and ERbeta) and androgen receptors (AR)
metformin estrogen-receptor androgen-receptor docking in-silico
0
guillaume-gricourt / HmnRandomRead
A sequence-read simulator program for NGS
in-silico next-generation-sequencing quality-control short-reads illumina bioinformatics
Language:C 0
NoeDemange / Cage-Moleculaire
Génération de guides de cages moléculaires
cage-moleculaire generation generation-algorithms molecular-cage specifique substrat-specifique cheminformatics in-silico
Language:C 0
omicscodeathon / cdk1_crc
In silico identification of CDK1 inhibitors in colorectal cancer
cancer cdk1 docking drug-discovery in-silico inhibitors molecular-dynamics-simulation
0
BlueBrain / brain-indexer
Create indexes of simple shapes and find all indexed elements that intersect with a query region.
connectome in-silico neuroscience spatial-index
Language:C++
BlueBrain / brain-indexer-test-data
Test data for brain-indexer
in-silico neuroscience spatial-index
Language:AGS Script

in-silico

geem-lab / overreact

gear-genomics / dicey

Protein-Engineering-Framework / PyPEF

carboncopies / BrainGenix-NES

ArsoVukicevic / OpenMandible

niklases / PyPEF

gear-genomics / silica

geem-lab / overreact-guide

arnaudporet / kali

tseemann / injecta

benjamindkilleen / SPIE-2022_cortical-breach-anticipation

abhijeetsingh1704 / REDigest

CardiacModelling / hERG-binding-mechanisms

forstertim / insidapy

AhmedElsherbini / HTS_insilico_PCR

BlueBrain / functionalizer

git-abra / Neuzy

moorugi98 / Hodgkin-Huxley_network

DrPaulValle / Bioestadistica-para-el-ajuste-de-datos-experimentales

ecairrao / Molecular-Docking-of-Metformin

guillaume-gricourt / HmnRandomRead

NoeDemange / Cage-Moleculaire

omicscodeathon / cdk1_crc

BlueBrain / brain-indexer

BlueBrain / brain-indexer-test-data