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Master Equation vs Montecarlo for simulating Single Electron Transistor behavior in MATLAB
A Jupyter notebook reproducing the results of "Nonlinear response of the vacuum Rabi resonance"
Markovian-dynamics is a Python package built to simplify dynamics calculations in thermodynamic systems.
Qutip Monte Carlo to solve the dynamics of time-local non-Markovian master equations
Julia package to simulate stochastic processes.
Bayesian inference of stochastic cellular processes with and without memory in Python.
Project for Physical Methods of Biology based on Kim JK, Tyson JJ (2020) Misuse of the Michaelis–Menten rate law for protein interaction networks and its remedy. PLoS Comput Biol 16(10): e1008258. https://doi.org/10.1371/journal. pcbi.1008258.
Stochastic Solution Method of the Master Equation and the Model Boltzmann Equation