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GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH (Gregor-Mendel-Institute)

GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH

Gregor-Mendel-Institute

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Location:Vienna, Austria

Home Page:www.gmi.oeaw.ac.at

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GMI: Gregor Mendel Institute of Molecular Plant Biology GmbH's repositories

aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

Language:NextflowLicense:GPL-3.0Stargazers:40Issues:6Issues:16

bookend

End-guided RNA assembler

Language:PythonLicense:MITStargazers:14Issues:7Issues:3

TRG-ImageProcessing

Swarts Lab CNN stuff

Language:PythonLicense:MITStargazers:10Issues:10Issues:3

SNPmatch

A simple python library to identify the most likely strain from the population

Language:PythonLicense:MITStargazers:9Issues:7Issues:17

GWA-Portal

Web-app to store an display GWAS studies

Language:JavaStargazers:5Issues:3Issues:199

gwaR

A collection of R functions to conduct downstream GWAS analysis for arabidopsis thaliana.

Language:RLicense:MITStargazers:3Issues:8Issues:4

PhenoBox-System

The “Phenobox”, a flexible, automated, open-source plant phenotyping solution

Language:PythonLicense:GPL-2.0Stargazers:3Issues:9Issues:0

dormancy

Dormancy Paper infos

Language:RStargazers:2Issues:6Issues:0

nanoPARE

RNA 5' analysis tools for use with the nanoPARE protocol

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pyBsHap

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ScanPlateSeg

Python scripts for detection and alignment of dish in scanned seedling data

Language:PythonLicense:GPL-3.0Stargazers:1Issues:7Issues:0

nf-haplocaller

Nextflow pipeline for GATK best practices (HaplotypeCaller)

Language:NextflowLicense:MITStargazers:0Issues:2Issues:1

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

Language:PythonLicense:GPL-2.0Stargazers:0Issues:6Issues:0

gwaportal-gwas-server

Server for accessing HDF5 files and python analysis from GWA-Portal

Language:PythonLicense:MITStargazers:0Issues:3Issues:2

gwaportal-hpc-pipeline

HPC pipeline for GWA-Portal

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GWAPP

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GWAS-nf

Nextflow pipeline to run genome wide association studies using limix

Language:NextflowLicense:MITStargazers:0Issues:1Issues:0

gwas_workshop

basic GWAS workshop in jupyter notebook form

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:0Issues:0Issues:0

image-jenkins

Jenkins CasC container image

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jamge_states_2023

Code and data for figures in elife paper

Language:RStargazers:0Issues:4Issues:0

kWIP-nf

A nextflow pipeline to estimate sample (dis)similarity using kWIP

Language:NextflowLicense:MITStargazers:0Issues:8Issues:0

nf-methylpy

Nextflow pipeline for running methylpy

Language:NextflowLicense:MITStargazers:0Issues:7Issues:0

pisupati-gbm-paper-2022

Supplementary data and notebooks required for the paper.

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PROalign

Modified from https://github.com/JAJ256/PROseq_alignment.sh

Language:ShellLicense:MITStargazers:0Issues:0Issues:0

riboflow

Pipeline for Ribosome Profiling Data

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RKP2021-CMT3

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RNASeqWebApp

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singularity-jupyterlab-sos

Jupyterlab container with SOS kernels

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test-data

Repository that stores test datasets for CI testing

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vbc-cicd

VBC Jenkins CICD library

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