lncrna

There are 0 repository under lncrna topic.

• tderrien / FEELnc

  FEELnc : FlExible Extraction of LncRNA

  lncrnarna-seqannotation
  Language:Perl 76

• biocoder / Perl-for-Bioinformatics

  An attempt to help anyone interested in using Perl for Bioinformatics

  bioinformaticspipelineperlncrnalncrnamirna
  Language:Python 32

• nf-core / lncpipe

  UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets

  lncrnarna-seq-analysistranscriptomedifferential-expressionnf-corenextflowworkflowpipelinernalong-non-codingnon-coding
  Language:Nextflow 30

• gao-lab / CPC2_standalone

  Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

  bioinformaticscpc2lncrnalong-non-codingnoncoding
  Language:Python 20

• bioinformatist / LncPipeReporter

  An R package for automatically aggregating and summarizing lncRNA analysis results.

  lncrnarmarkdowninteractive-plotsplotplotlyr-packager
  Language:R 16
• CLASS_2021

  boulderrinnlab / CLASS_2021

  Statistical and computational analysis of the human genome

  chip-seqrna-seqrbashencodelncrnaepigenticsgenomicsgenome-analysis
  Language:R 14

• zhangjunpeng411 / LncmiRSRN

  LncmiRSRN: Identifying lncRNA related miRNA sponge regulatory network

  lncrnamirnacernasponge
  Language:R 13

• Alipe2021 / NLncCirSmk

  Pipeline for lncRNA, Circular RNA, and novel mRNA identification.

  lncrnacircularsnakemake-workflows
  Language:Python 11

• schosio / CHOLAR

  Automated RNA-seq pipeline for lncRNA indentification

  automatedlncrnalncrna-pipelinerna-seq-analysisrna-seq-pipelinelncrna-identificationbioinformatics
  Language:Shell 9

• UDC-GAC / pato

  PATO: high PerformAnce TriplexatOr is a high performance tool for the fast and efficient detection of triple helices and triplex features in nucleotide sequences

  lncrnaparallelismtriplexlncrna-dnahigh-performancebioinformaticsparallelopenmpseqan
  Language:C++ 9

• pandora414 / lncRNA

  lncRNA分析流程

  lncrnanextflow
  Language:Perl 8

• urmi-21 / PLncPRO

  A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

  lncrnabioinformaticsrandom-forestprediction
  Language:Python 8

• acesnik / LncRNADiscovery

  Snakemake pipeline for lncRNA discovery and quantification

  lncrnapipelinesnakemakesnakemake-workflowsgenomics
  Language:C# 5

• haichengyi / bioseq2vec

  BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder

  biological-sequencescircrnasencoder-decoderlncrnalstmmirnancrna-protein-interactionsprotein-sequencerepresentation-learningrna-sequencesequence-to-sequence
  Language:Python 4

• noncodo / BigRedButton

  Pipeline for the unsupervised clustering of homologous RNA structure motifs from sequencing data.

  bioinformaticsrna-structurelncrnatranscriptomicsgenome-annotation
  Language:TeX 4

• LieberInstitute / marchionni_projects

  Collaboration with Luigi Marchionni (JHU) and RIKEN with recount2 data

  recountrecount2fantom6biorxivfantom5fantomlncrnarstats
  Language:Shell 3

• lim74 / LncDC

  LncDC: a machine-learning based tool for long non-coding RNA detection from RNA-Seq data

  bioinformaticslncrnamachine-learningpredictionrna-seqsequencing
  Language:Python 3

• zhangjunpeng411 / MSLCRN

  MSLCRN: a novel step-wise method for inferring module-specific lncRNA-mRNA causal regulatory network in human cancer

  lncrnamrnahuman-cancerregulatory-network
  Language:R 3

• IGDRion / ANNEXseq

  Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

  annotation-toollncrnalong-read-sequencingnanopore-sequencing
  Language:Nextflow 2

• pentalpha / rna_gatherer_2020

  ncRNA identification, annotation and functional prediction

  bioinformaticsbioinfoncrnafunctional-predictiongene-functionfunctional-annotationgene-predictionncrna-protein-interactionslncrnalncrna-pipelinegene-annotationpipeline
  Language:Python 2

• UDC-GAC / pRIblast

  pRIblast is a high efficient, parallel application for extensive lncRNA-RNA interaction analysis

  bioinformaticshigh-performancelncrnaparallelismlncrna-rnampiopenmpparallelparallel-computing
  Language:C++ 2

• chenchenxiong / ASDmiR

  ASDmiR: a step-wise method to uncover miRNA regulation related to autism spectrum disorder

  autism-spectrum-disorderlncrnamirnamirna-spongemrna
  Language:Emacs Lisp 1

• jonbra / jonbra.github.io

  Testing how to use Jekyll and GitHub Pages to make a webiste.

  rna-seqevolutionanimalsphylogenygene-expressionevo-devodevelopmentmirnalncrna
  Language:SCSS 1

• vivek37373 / lncFETCHER

  Bioinformatics pipeline for lncRNA prediction in Arabiodpsis thaliana

  arabidopsis-thalianalncrnapipelinerna-seq
  Language:Shell 1

• zhangjunpeng411 / SpongeModule

  In silico methods for predicting miRNA sponge modules

  mirnacernamirna-spongelncrnamrnapseudogenepancancermirna-sponge-modulescerna-modules
  Language:MATLAB 1

• EnrightLab / bitetti_et_al_codebase

  Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"

  micrornalncrnasequencingsmallrna
  Language:HTML 0

• NhanNguyen000 / lncRNA_ANT

  This repository for analysing lncRNAs from RNA-seq anthracycline data (HeCaToS project)

  bioinformaticslncrnarna-seqanthracyclinecardiotoxicity
  Language:HTML 0

• xiaofengsong / LncMiM

  LncMiM, a tool to identify lncRNA-associated competing triplets, especially for large-scale expression data.

  lncrnacompetingtripletmirna
  Language:R 0

• MarioniLab / LOFMethods2016

  Code for Lovorka and Aaron's lncRNA loss-of-function project.

  lncrnadifferential-expression
  Language:R

• matheuscburger / DengueAnalysis

  transcriptomicsdengue-feverbioinformatics-analysislncrna
  Language:R

• SherineAwad / lncRNA

  Snakemake pipeline to detect novel lncRNA

  lncrna
  Language:Python