DeepGeneAnnotator: A tool to annotate the gene in the genome
The master thesis of the "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana" is shown in here.
Figure 1. The pipeline of the deep learning model prediction
Figure 2. The architecture for the feature block
Figure 3. The architecture for the relation block
Figure 4. The hierarchy inference method
Figure 5. The hierarchy loss formula
Figure 6. The augementation method
Figure 7. The boundary post-processing procedure
Figure 8. The comparison between proposed method with Augustus
Reference
If you want to cite the DeepGeneAnnotator, please consider citing as the following:
Wang, Ching-Tien. (2020). Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana.
(Master thesis), National Taiwan University, Retrieved from https://dx.doi.org/10.6342/NTU202002143