plant-phenotyping
There are 8 repositories under plant-phenotyping topic.
- plantcv
danforthcenter / plantcv
Plant phenotyping with image analysis
Language:Python 738 robail-yasrab / RootNav-2.0
Plant Phenotyping APP
Language:Python 45Gregor-Mendel-Institute / aradeepopsis
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
Language:Nextflow 43csiro-robotics / UPGen
The official repository for the paper: Scalable learning for bridging the species gap in image-based plant phenotyping.
Language:Python 25neemiasbsilva / regression-in-CNNs-applied-to-plant-leaf-count
Regression in Convolutional Neural Network applied to Plant Leaf Count
Language:Jupyter Notebook 19adamavip / nirs-protein-prediction
We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals
Language:Jupyter Notebook 14chinazhouzhaoyi / SOM-down-sampling-for-plant-point-clouds
[ISPRS P&RS] Unsupervised shape-aware SOM down-sampling for plant point clouds
Language:Python 14Lewis-Stuart-11 / 3D-Plant-View-Synthesis
Main repo for the running/training on the dataset presented in 'High-fidelity Wheat Plant Reconstruction using 3D Gaussian Splatting and Neural Radiance Fields'
Language:Python 13MarniTausen / Greenotyper
Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individual plant over time.
Language:Python 13amy-tabb / CASS
Code for taking measurements from images of an object on top of a calibration pattern.
Language:C++ 7kentavv / flir-batch-process
Batch process FLIR radiometric (thermal) JPEGs and generate clean lossless images with consistent scale and palette
Language:Python 7Phenome 2020 Digital Phenotyping workshop materials
Language:Jupyter Notebook 5phytooracle / automation
Modular, Scalable Phenomic Data Processing Pipelines
Language:Python 5ricber / Plant-Phenotyper
A modular software architecture for Automatic Plant Phenotyping
Language:C++ 5jberry47 / ddpsc_phenotypercv
Header-only C++11 library using OpenCV for high-throughput image-based plant phenotyping
Language:C++ 4A repository with notes from the seminar given on 28 November 2018.
anguyen216 / Deep-Learning-based-Plant-Phenotyping
Detecting phenotypic traits such as leaf and collar count in soybean plants using deep learning
Language:Python 3grimmlab / phenotype_prediction
A comparison of classical and machine learning-based phenotype prediction methods on simulated data and three plant species
Language:Jupyter Notebook 3rayngrowingsystems / RVS_Analytics
Application for hyper/multispectral image analysis
Language:HTML 1BoMeyering / BoMeyering.github.io
My Github Portfolio and CV
Language:HTML 0Uzezi93 / Genetic-Basis-of-Seed-Trait-Variation-Rice
Workflow for seed phenotyping of USDA rice minicore population, including statistical analysis, and GWAS (Modified from Marrano and Moyers, 2022)
Language:Jupyter Notebook 0Code for calibrating a camera using a pattern, exif tags, and then warping to physical dimensions * a scaling factor. Originally for use in plant phenotyping.