enormandeau

Scripts

Collection of various scripts

stacks_workflow

RADseq workflow built around STACKS

gawn

Genome Annotation Without Nightmares

barque

Environmental DNA metabarcoding taxonomic identification

go_enrichment

Transcripts annotation and GO enrichment Fisher tests

snplift

Convert genetic variant coordinates across genome assemblies

meditation-timer

Simple meditation timer for Linux in Python

mapcomp

Genetic Map Comparison

wgs_sample_preparation

Trim, Align to genome, Deduplicate, Realign WGS sequencing samples

github_tutorial

Introduction to Git and GitHub

python_exercises

A set of Python3 exercises to develop solid scripting foundations

club_bioinfo_ibis

Club de Programmation de l'IBIS

coelopa_fastsim

Coelopa inversion selection simulation in Rust

introR_2020

Formation à distance d'introduction à R - Édition 2020

angsd_pipeline

bwa-meth_pipeline

WGBS pipeline using bwa-meth and MethylDackel

headcopy

Improve cw (morse code) head copying speed

advent_of_code_2022

Python solutions to Advent of Code 2022

barque_test_dataset

Small eDNA metabarcoding dataset to test the [Barque pipeline](https://github.com/enormandeau/barque)

guideseq_ibis

Guide-seq analysis pipeline

guideseq_ibis_test_dataset

Test dataset for GUIDE-seq IBIS

ibis_server_commands

Helpful commands to play with SLURM on manitou, superdome, valeria...

intro_python_2020

Introduction en ligne à Python créée pour le RAQ

lost

mreps_workflow

Extract interesting microsatellite markers using mreps and format them into a usable .tsv format

pilon_workflow

Simple pilon workflow to save time

planets

Planets of the Solar System

qmk_firmware

Open-source keyboard firmware for Atmel AVR and Arm USB families

snplift_test_dataset

Test dataset for SNPLift

wgbs_workflow

Pipeline for WGBS analysis with multifactorial experimental designs