rdna
There are 0 repository under rdna topic.
ChefKissInc / NootRX
The rDNA 2 dGPU support patch kext. No commercial use.
Language:C++ 527nextgenusfs / amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Language:Python 35vikramparalkar / rDNA-Mapping-Genomes
Human and mouse genome assemblies customized for rDNA mapping
terrimporter / 18SClassifier
This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.
Language:Perl 3FrietzeLabUVM / TAP
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
Language:Shell 1kemcelroy / Pant_rDNAhistones
Bioinformatic methods used in McElroy et al. (2021). Asexuality associated with marked genomic expansion of tandemly repeated rRNA and histone genes. Molecular Biology and Evolution.
zadyson / OTUStalker
OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.
Language:Java 0This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
Language:Perl