coi
There are 0 repository under coi topic.
- Language:Dart 177
nextgenusfs / amptk
AMPtk: Amplicon ToolKit for NGS data (formally UFITS)
Language:Python 35terrimporter / CO1Classifier
This repository contains CO1 reference sets that can be used with the RDP Classifier, BLAST, or SINTAX to classify COI metabarcode sequences.
bailey-lab / coiaf-real-data
MalariaGEN Plasmodium falciparum Community Project analysis using coiaf
Language:HTML 6This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
Language:Perl 6NotoriousPyro / WasteManagement
Waste Management for Captain of Industry game
Language:C# 4oubrecht-com / coi-adblock-list
ÄŚOI adblock list
Complexity of Infection Estimation with Allele Frequencies
Language:R 3Unpowered Balancers for Captain of Industry game
Language:C# 3- Language:C# 2
- Language:C# 2
Hajibabaei-Lab / HajibabaeiEtAl2019
Datasets and code used to create figures in "Hajibabaei et al., 2019. COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems. PLoS ONE 14(9): e0220953."
Language:R 1Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
Language:Perl 1open-xchange / ox-coi-xcode-templates
A set of Xcode file templates to use when developing on OX Coi
Language:Shell 1pipecraft2 / pipecraft
PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines
Language:Shell 1BelyaevaAlex / -Crustacean-hoods-strive-for-power
This is the repository for the PAP-DPB2 Phylogenetic analysis project.
Language:Jupyter Notebook 0EcoBiomics-Zoobiome / SCVUC_COI_metabarcode_pipeline
Data flow to process COI metabarcodes
Language:Perl 0COI sequences files used to test the COI Classifier Web Portal
0Datasets and code used to create figures in "Hajibabaei et al., 2019. Watered-down biodiversity? A comparison of metabarcoding results from DNA extracted from matched water and bulk tissue biomonitoring samples. PLoS ONE 14(12): e0225409."
Language:R 0LuisRodrigoArce-Valdes / Climate_Change_Hybridization
Back up for the review and scripts used in the article "The evolutionary outcomes of climate-change-induced hybridization in insect populations." published in COIS,
Language:R 0clarkevansteenderen / DactyID
An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.
Language:Rnonpartisan-redistricting-datahub / COI-Analysis
A python script that makes it easy to analyze multiple COIs (Communities of Interest) and generate heat maps and metrics of interest.
Language:PythonThis repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
Language:Perl
