ngstools

There are 0 repository under ngstools topic.

fritzsedlazeck / SVCollector
Method to optimally select samples for validation and resequencing
ngstools ngs bioinformatics structural-variation vcf long-reads
Language:C++ 26
khuang28jhu / bs3
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
alignment bisulfite methylation-rate-calculation ngstools python-2
Language:Python 25
SchulzLab / ORNA
Fast in-silico normalization algorithm for NGS data
ngstools normalization rna-seq metagenomics metagenomic-analysis rna-seq-analysis
Language:C++ 22
apietrelli / myVCF
myVCF: a web-based platform for target and exome mutations data management
gui myvcf-gui ngs ngstools bioinformatics
Language:Python 20
ALAPY / alapy_arc
ALAPY COMPRESSOR: FASTQ lossless compressor
fastq fastq-files alapy-compressor compressor compression fastq-compression ngs ngstools
8
rptashkin / facets2n
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
copy-number-variation somatic-variants ngs ngstools ngs-analysis
Language:R 6
TimoLassmann / tagdust
A tool to extract mappable reads from various library preparation protocols.
bioinformatics computational-biology genomics ngs-analysis ngstools
Language:C 6
cchrysostomou / seqtables
Tools for analyzing NGS sequence data and aligned protein sequences
aligned-sequences dna ngs-analysis ngstools pandas plotly protein
Language:Python 5
akiomiyao / ped
Polymorphic Edge Detection - An efficient polymorphism detector for NGS data
polymorphism inversion insertion ngs deletion snp k-mer ngstools alignment-free-algorithm somatic-mutations genotype sequence-alignments variant cnv copy-number-variation crispr-cas9
Language:Perl 4
kpatel427 / bash
useful bash one-liners and scripts
samtools ngs multithreading ngstools exome-sequencing-analysis
Language:Shell 3
simras / CLAP
CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.
bioinformatics-pipeline ngstools clip-seq par-clip iclip hits-clip
Language:Perl 2
smangul1 / ec
This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools
ngstools umi
Language:Python 1
tiagoantonio / woland
WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
mutation-analysis mutation-summary mutations ngstools ngs-data
Language:Perl 1
whl-usc / cris_tools
A collection of various tools useful for the deep analysis of data generated via the CRSSANT/rna2d3d pipeline.
bioinformatics ngs ngstools rnaseq
Language:Python 1
FSUgenomics / SRSFseq
SRSF shape analysis framework for sequencing data
shape-analysis square-root-velocity ngs-pipeline ngs-analysis ngstools ngs-data
Language:R 0
MBeyens / pyAmpli
pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data
variant-filtration ngstools somatic-variants germline amplicons targeted-sequencing haloplex mips ngs genomics bioinformatics variants
Language:Python 0
rodriguez-salarichs / vecscreen_extract
Program extracts a valuable information from an output vecscreen file
fortran ngstools dna-seq rna-seq
Language:Roff 0
Volcanix280 / Mouse_Study_Pipeline
(Archived) This page is a record of my first formal NGS Project for Dr. Matesic of University of South Carolina (USC).
bioinformatics-pipeline bioinformatics-scripts fastq genetics ngs ngstools pbs sra sra-files tophat
0
chgibb / unMappedCIGARFragments
Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)
bioinformatics bioinformatics-analysis bioinformatics-tool cigar dna ngs ngs-analysis ngstools samtools
Language:TypeScript
ddiez / ngstools
Miscellaneous tools for the analysis of NGS data
r ngs omics ngstools bioinformatics
Language:R
osvaldogc / nextpresso1.9
Next generation sequencing expression analysis pipeline
ngs ngstools rna-seq tophat deseq2 gsearch cufflinks
Language:Perl

ngstools

fritzsedlazeck / SVCollector

khuang28jhu / bs3

SchulzLab / ORNA

apietrelli / myVCF

ALAPY / alapy_arc

rptashkin / facets2n

TimoLassmann / tagdust

cchrysostomou / seqtables

akiomiyao / ped

kpatel427 / bash

simras / CLAP

smangul1 / ec

tiagoantonio / woland

whl-usc / cris_tools

FSUgenomics / SRSFseq

MBeyens / pyAmpli

rodriguez-salarichs / vecscreen_extract

Volcanix280 / Mouse_Study_Pipeline

chgibb / unMappedCIGARFragments

ddiez / ngstools

osvaldogc / nextpresso1.9