erinyoung

roundabout

Finding regions of similarity between plasmids

CirculoCov

Estimates the coverage of nanopore or illumina reads on a draft assembly

ACI

Some NGS library preps use amplicons, and it can be difficult to determine the coverage and depth of each amplicon.

phoenix

🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens

soundtracks

A list of video game soundtracks that are great for work

bioconda-recipes

Conda recipes for the bioconda channel.

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

erinyoung

MultiQC_TestData

Test data for MultiQC. See https://github.com/ewels/MultiQC

Random

Random things I don't want to forget

sars-cov-2-workflow-comparison

A collection of workflows for analyzing the SARS-CoV-2 genome.

GA_testing

Just playing around with GA

HeatCluster

Creates a heat map with an accompanying cluster map for a SNP matrix

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

nanoAMR

TBD : Getting AMR genes from nanopore reads

VectorDetective

Nextflow workflow for identification of Blood Source in Mosquito Bloodmeal

workshop