SamueleSoraggi

HMMploidy

A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models

angsd

Program for analysing NGS data.

bayesian_statistics

Notes, slides and exercises from bayesian statistics readings

course-template

A course template for courses

Dash-tutorials

Incrementally difficult dash apps to learn some interactive plots

docker-scanpy

Docker for scRNA-seq analysis in python

Docker_for_reproducibility

DoubletFinder

R package for detecting doublets in single-cell RNA sequencing data

HMM-matlab

launch-dash-with-docker

Two small example to make a dash interactive interface work with either gunicorn or jupyterlab

MBG-AU-computational-biology-2023

example course repository to test

MBG-AU-data-analysis-2023

example course repository to test

MBG-course-template

course template

Projection_and_clustering_tutorial

pymc-quap

Quadratic Approximation for PyMC

robustbase

A Python Based Library to Calculate Statistical Estimators

SamueleSoraggi.github.io

professional webpage

scsm

single cell single molecule course exercise material and webpage

single-cell-standardized-pipeline

transcriptomics_app_ucloud

Development of the transcriptomics app based on Rstudio for UCloud

useful-scripts

Scripts I have found really useful when working. Various programming languages.