sunyatin

ASCEND

Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.

Probabilistic-Neanderthal-admixture-dating

Method for estimating the age of admixture using a single diploid sample and genotype likelihoods.

McSwan

Multiple-collision Coalescent SWeep ANalyzer. McSwan is a R package to infer the extent and the dynamics of natural selection in the genomes of single or multiple populations.

angsd

Program for analysing NGS data.

foldSFS-cpp

Script to fold probabilistic 2D joint site frequency spectra (cf ANGSD), where the minor allele is defined as the allele with lowest count across the two populations.

itara

Repository of various functions and scripts.

qna

qna_data

vanaprabhava

Method to simulate species abundance spectra in a metacommunity using a modified Kingman coalescent.