pool-sequencing

There are 0 repository under pool-sequencing topic.

• grenepipe

  moiexpositoalonsolab / grenepipe

  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

  variant-callssnakemakeevolve-and-resequencepopulation-geneticsancient-dnavariant-callingpool-sequencinggenomic-variant-callingsnakemake-workflow
  Language:Python 83

• lczech / genesis

  A library for working with phylogenetic and population genetic data.

  c-plus-plusphylogeneticsevolutionary-placementphylogenetic-dataphylogenetic-treesphylogenetic-placementsplacementpopulation-geneticspool-sequencing
  Language:C++ 56
• grenedalf

  lczech / grenedalf

  Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

  pool-sequencingevolve-and-resequenceallele-frequenciespopulation-geneticspopoolationpopoolation2poolfstat
  Language:C++ 26

• jeffersonfparil / poolgen

  Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

  pool-seq-datapool-sequencingquantitative-geneticsfamiliespolyploidpopulation-geneticsallele-frequenciesbioinformaticsevolutiongenomic-selectiongwasheterozygositysite-frequency-spectrumgenomic-prediction
  Language:Rust 3

• MartaPelizzola / ACER

  Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

  adaptedchi-square-testevolutiondriftpool-sequencing
  Language:R 2

• ozankiratli / poolseq-VCF2FREQ

  A tool to convert poolseq VCF to allele frequencies.

  awkbashpool-sequencing
  Language:Shell 1